/* * This class was automatically generated with * Castor 1.1, using an XML * Schema. * $Id$ */ package jalview.schemabinding.version2.descriptors; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import jalview.schemabinding.version2.SequenceSet; /** * Class SequenceSetDescriptor. * * @version $Revision$ $Date$ */ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * Field _elementDefinition. */ private boolean _elementDefinition; /** * Field _nsPrefix. */ private java.lang.String _nsPrefix; /** * Field _nsURI. */ private java.lang.String _nsURI; /** * Field _xmlName. */ private java.lang.String _xmlName; // ----------------/ // - Constructors -/ // ----------------/ public SequenceSetDescriptor() { super(); _nsURI = "www.vamsas.ac.uk/jalview/version2"; _xmlName = "SequenceSet"; _elementDefinition = true; // -- set grouping compositor setCompositorAsSequence(); org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; org.exolab.castor.mapping.FieldHandler handler = null; org.exolab.castor.xml.FieldValidator fieldValidator = null; // -- initialize attribute descriptors // -- _gapChar desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceSet target = (SequenceSet) object; return target.getGapChar(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.setGapChar((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _gapChar fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _datasetId desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceSet target = (SequenceSet) object; return target.getDatasetId(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.setDatasetId((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _datasetId fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- initialize element descriptors // -- _sequenceList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceSet target = (SequenceSet) object; return target.getSequence(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.addSequence((jalview.schemabinding.version2.Sequence) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.removeAllSequence(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new jalview.schemabinding.version2.Sequence(); } }; desc.setHandler(handler); desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _sequenceList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); // -- _annotationList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceSet target = (SequenceSet) object; return target.getAnnotation(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.addAnnotation((jalview.schemabinding.version2.Annotation) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.removeAllAnnotation(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new jalview.schemabinding.version2.Annotation(); } }; desc.setHandler(handler); desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _annotationList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); // -- _sequenceSetPropertiesList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceSet target = (SequenceSet) object; return target.getSequenceSetProperties(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.addSequenceSetProperties((jalview.schemabinding.version2.SequenceSetProperties) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.removeAllSequenceSetProperties(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new jalview.schemabinding.version2.SequenceSetProperties(); } }; desc.setHandler(handler); desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _sequenceSetPropertiesList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); // -- _alcodonFrameList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceSet target = (SequenceSet) object; return target.getAlcodonFrame(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.addAlcodonFrame((jalview.schemabinding.version2.AlcodonFrame) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { SequenceSet target = (SequenceSet) object; target.removeAllAlcodonFrame(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new jalview.schemabinding.version2.AlcodonFrame(); } }; desc.setHandler(handler); desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _alcodonFrameList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); } // -----------/ // - Methods -/ // -----------/ /** * Method getAccessMode. * * @return the access mode specified for this class. */ public org.exolab.castor.mapping.AccessMode getAccessMode() { return null; } /** * Method getIdentity. * * @return the identity field, null if this class has no identity. */ public org.exolab.castor.mapping.FieldDescriptor getIdentity() { return super.getIdentity(); } /** * Method getJavaClass. * * @return the Java class represented by this descriptor. */ public java.lang.Class getJavaClass() { return jalview.schemabinding.version2.SequenceSet.class; } /** * Method getNameSpacePrefix. * * @return the namespace prefix to use when marshaling as XML. */ public java.lang.String getNameSpacePrefix() { return _nsPrefix; } /** * Method getNameSpaceURI. * * @return the namespace URI used when marshaling and unmarshaling as XML. */ public java.lang.String getNameSpaceURI() { return _nsURI; } /** * Method getValidator. * * @return a specific validator for the class described by this * ClassDescriptor. */ public org.exolab.castor.xml.TypeValidator getValidator() { return this; } /** * Method getXMLName. * * @return the XML Name for the Class being described. */ public java.lang.String getXMLName() { return _xmlName; } /** * Method isElementDefinition. * * @return true if XML schema definition of this Class is that of a global * element or element with anonymous type definition. */ public boolean isElementDefinition() { return _elementDefinition; } }