/*
 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
 * Copyright (C) $$Year-Rel$$ The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.structure;

import jalview.datamodel.SearchResultsI;
import jalview.datamodel.SequenceI;

public interface SequenceListener
{
  // TODO remove this? never called on SequenceListener type
  public void mouseOverSequence(SequenceI sequence, int index, int pos);

  /**
   * Highlights any position(s) represented by the search results and
   * (optionally) returns an informative message about the position(s)
   * higlighted
   * 
   * @param results
   * @return
   */
  public String highlightSequence(SearchResultsI results);

  // TODO remove this? never called
  public void updateColours(SequenceI sequence, int index);

  public VamsasSource getVamsasSource();

}