package jalview.ws.jws2; import jalview.api.AlignCalcWorkerI; import jalview.bin.Cache; import jalview.gui.AlignFrame; import jalview.gui.JvSwingUtils; import jalview.util.MessageManager; import jalview.ws.api.ServiceWithParameters; import jalview.ws.jws2.dm.AAConSettings; import jalview.ws.jws2.jabaws2.Jws2Instance; import jalview.ws.params.AutoCalcSetting; import jalview.ws.uimodel.AlignAnalysisUIText; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; import java.util.List; import javax.swing.JCheckBoxMenuItem; import javax.swing.JMenu; import javax.swing.JMenuItem; import javax.swing.event.MenuEvent; import javax.swing.event.MenuListener; public class Jws2ClientFactory { static boolean registerAAConWSInstance(final JMenu wsmenu, final ServiceWithParameters service, final AlignFrame alignFrame) { final AlignAnalysisUIText aaui = service.getAlignAnalysisUI(); // null // ; // // AlignAnalysisUIText.aaConGUI.get(service.serviceType.toString()); if (aaui == null) { // not an instantaneous calculation GUI type service return false; } // create the instaneous calculation GUI bits and update state if existing // GUI elements already present JCheckBoxMenuItem _aaConEnabled = null; for (int i = 0; i < wsmenu.getItemCount(); i++) { JMenuItem item = wsmenu.getItem(i); if (item instanceof JCheckBoxMenuItem && item.getText().equals(aaui.getAAconToggle())) { _aaConEnabled = (JCheckBoxMenuItem) item; } } // is there an aaCon worker already present - if so, set it to use the // given service handle { List aaconClient = alignFrame.getViewport() .getCalcManager() .getRegisteredWorkersOfClass(aaui.getClient()); if (aaconClient != null && aaconClient.size() > 0) { SeqAnnotationServiceCalcWorker worker = (SeqAnnotationServiceCalcWorker) aaconClient .get(0); if (!worker.service.getHostURL().equals(service.getHostURL())) { // javax.swing.SwingUtilities.invokeLater(new Runnable() { // @Override // public void run() { removeCurrentAAConWorkerFor(aaui, alignFrame); buildCurrentAAConWorkerFor(aaui, alignFrame, service); } } // ); } } } // is there a service already registered ? there shouldn't be if we are // being called correctly if (_aaConEnabled == null) { final JCheckBoxMenuItem aaConEnabled = new JCheckBoxMenuItem( aaui.getAAconToggle()); aaConEnabled.setToolTipText( JvSwingUtils.wrapTooltip(true, aaui.getAAconToggleTooltip())); aaConEnabled.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent arg0) { List aaconClient = alignFrame.getViewport() .getCalcManager().getRegisteredWorkersOfClass( SeqAnnotationServiceCalcWorker.class); if (aaconClient != null) { for (AlignCalcWorkerI worker : aaconClient) { if (((SeqAnnotationServiceCalcWorker) worker).getService() .getClass().equals(aaui.getClient())) { removeCurrentAAConWorkerFor(aaui, alignFrame); return; } } } buildCurrentAAConWorkerFor(aaui, alignFrame); } }); wsmenu.add(aaConEnabled); final JMenuItem modifyParams = new JMenuItem( aaui.getAAeditSettings()); modifyParams.setToolTipText(JvSwingUtils.wrapTooltip(true, aaui.getAAeditSettingsTooltip())); modifyParams.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent arg0) { showAAConAnnotationSettingsFor(aaui, alignFrame); } }); wsmenu.add(modifyParams); wsmenu.addMenuListener(new MenuListener() { @Override public void menuSelected(MenuEvent arg0) { // TODO: refactor to the implementing class. if (alignFrame.getViewport().getAlignment().isNucleotide() ? aaui.isNa() : aaui.isPr()) { aaConEnabled.setEnabled(true); modifyParams.setEnabled(true); } else { aaConEnabled.setEnabled(false); modifyParams.setEnabled(false); return; } List aaconClient = alignFrame.getViewport() .getCalcManager().getRegisteredWorkersOfClass( SeqAnnotationServiceCalcWorker.class); boolean serviceEnabled = false; if (aaconClient != null) { // NB code duplicatino again! for (AlignCalcWorkerI _worker : aaconClient) { SeqAnnotationServiceCalcWorker worker = (SeqAnnotationServiceCalcWorker) _worker; // this could be cleaner ? if (worker.hasService() && aaui.getClient() .equals(worker.getService().getClass())) { serviceEnabled = true; } } } aaConEnabled.setSelected(serviceEnabled); } @Override public void menuDeselected(MenuEvent arg0) { // TODO Auto-generated method stub } @Override public void menuCanceled(MenuEvent arg0) { // TODO Auto-generated method stub } }); } return true; } private static void showAAConAnnotationSettingsFor( final AlignAnalysisUIText aaui, AlignFrame alignFrame) { /* * preferred settings Whether AACon is automatically recalculated Which * AACon server to use What parameters to use */ // could actually do a class search for this too AutoCalcSetting fave = alignFrame.getViewport() .getCalcIdSettingsFor(aaui.getCalcId()); if (fave == null) { fave = createDefaultAAConSettings(aaui); } new SequenceAnnotationWSClient(fave, alignFrame, true); } private static void buildCurrentAAConWorkerFor( final AlignAnalysisUIText aaui, AlignFrame alignFrame) { buildCurrentAAConWorkerFor(aaui, alignFrame, null); } private static void buildCurrentAAConWorkerFor( final AlignAnalysisUIText aaui, AlignFrame alignFrame, ServiceWithParameters service) { /* * preferred settings Whether AACon is automatically recalculated Which * AACon server to use What parameters to use */ AutoCalcSetting fave = alignFrame.getViewport() .getCalcIdSettingsFor(aaui.getCalcId()); if (fave == null) { fave = createDefaultAAConSettings(aaui, service); } else { if (service != null && !fave.getService().getHostURL() .equals(service.getHostURL())) { Cache.log.debug("Changing AACon service to " + service.getHostURL() + " from " + fave.getService().getHostURL()); fave.setService(service); } } new SequenceAnnotationWSClient(fave, alignFrame, false); } private static AutoCalcSetting createDefaultAAConSettings( AlignAnalysisUIText aaui) { return createDefaultAAConSettings(aaui, null); } private static AutoCalcSetting createDefaultAAConSettings( AlignAnalysisUIText aaui, ServiceWithParameters service) { if (service != null) { // if (!service.getServiceType() // .equals(compbio.ws.client.Services.AAConWS.toString())) // { // Cache.log.warn( // "Ignoring invalid preferred service for AACon calculations (service // type was " // + service.getServiceType() + ")"); // service = null; // } // else { // check service is actually in the list of currently avaialable // services if (!PreferredServiceRegistry.getRegistry().contains(service)) { // it isn't .. service = null; } } } if (service == null) { // get the default service for AACon service = PreferredServiceRegistry.getRegistry().getPreferredServiceFor(null, aaui.getServiceType()); } if (service == null) { // TODO raise dialog box explaining error, and/or open the JABA // preferences menu. throw new Error( MessageManager.getString("error.no_aacon_service_found")); } return service instanceof Jws2Instance ? new AAConSettings(true, service, null, null) : new AutoCalcSetting(service, null, null, true); } private static void removeCurrentAAConWorkerFor(AlignAnalysisUIText aaui, AlignFrame alignFrame) { alignFrame.getViewport().getCalcManager() .removeRegisteredWorkersOfClass(aaui.getClient()); } }