// // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. // Generated on: 2018.12.20 at 11:47:26 AM GMT // package jalview.xml.binding.jalview; import java.math.BigInteger; import java.util.ArrayList; import java.util.List; import javax.xml.bind.annotation.XmlAccessType; import javax.xml.bind.annotation.XmlAccessorType; import javax.xml.bind.annotation.XmlAttribute; import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

 * <complexType>
 *   <complexContent>
 *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       <sequence>
 *         <element name="alcodon" maxOccurs="unbounded" minOccurs="0">
 *           <complexType>
 *             <complexContent>
 *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 <attribute name="pos1" type="{http://www.w3.org/2001/XMLSchema}integer" />
 *                 <attribute name="pos2" type="{http://www.w3.org/2001/XMLSchema}integer" />
 *                 <attribute name="pos3" type="{http://www.w3.org/2001/XMLSchema}integer" />
 *               </restriction>
 *             </complexContent>
 *           </complexType>
 *         </element>
 *         <element name="alcodMap" maxOccurs="unbounded" minOccurs="0">
 *           <complexType>
 *             <complexContent>
 *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 <sequence>
 *                   <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping"/>
 *                 </sequence>
 *                 <attribute name="dnasq" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
 *               </restriction>
 *             </complexContent>
 *           </complexType>
 *         </element>
 *       </sequence>
 *     </restriction>
 *   </complexContent>
 * </complexType>
 * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "alcodon", "alcodMap" }) @XmlRootElement(name = "AlcodonFrame") public class AlcodonFrame { protected List alcodon; protected List alcodMap; /** * Gets the value of the alcodon property. * *

* This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. * This is why there is not a set method for the alcodon property. * *

* For example, to add a new item, do as follows: *

     *    getAlcodon().add(newItem);
     * 
* * *

* Objects of the following type(s) are allowed in the list * {@link AlcodonFrame.Alcodon } * * */ public List getAlcodon() { if (alcodon == null) { alcodon = new ArrayList(); } return this.alcodon; } /** * Gets the value of the alcodMap property. * *

* This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. * This is why there is not a set method for the alcodMap property. * *

* For example, to add a new item, do as follows: *

     *    getAlcodMap().add(newItem);
     * 
* * *

* Objects of the following type(s) are allowed in the list * {@link AlcodonFrame.AlcodMap } * * */ public List getAlcodMap() { if (alcodMap == null) { alcodMap = new ArrayList(); } return this.alcodMap; } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

     * <complexType>
     *   <complexContent>
     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *       <sequence>
     *         <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping"/>
     *       </sequence>
     *       <attribute name="dnasq" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
     *     </restriction>
     *   </complexContent>
     * </complexType>
     * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "mapping" }) public static class AlcodMap { @XmlElement(name = "Mapping", required = true) protected Mapping mapping; @XmlAttribute(name = "dnasq", required = true) protected String dnasq; /** * * a Mapping entry and an associated protein sequence * * * @return * possible object is * {@link Mapping } * */ public Mapping getMapping() { return mapping; } /** * Sets the value of the mapping property. * * @param value * allowed object is * {@link Mapping } * */ public void setMapping(Mapping value) { this.mapping = value; } /** * Gets the value of the dnasq property. * * @return * possible object is * {@link String } * */ public String getDnasq() { return dnasq; } /** * Sets the value of the dnasq property. * * @param value * allowed object is * {@link String } * */ public void setDnasq(String value) { this.dnasq = value; } } /** * * specifies a series of aligned codons from an associated DNA sequence alignment that when translated correspond to columns of a peptide alignment. * Element may have either all pos1,2,3 attributes specified, or none at all (indicating a gapped column with no translated peptide). * * *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

     * <complexType>
     *   <complexContent>
     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *       <attribute name="pos1" type="{http://www.w3.org/2001/XMLSchema}integer" />
     *       <attribute name="pos2" type="{http://www.w3.org/2001/XMLSchema}integer" />
     *       <attribute name="pos3" type="{http://www.w3.org/2001/XMLSchema}integer" />
     *     </restriction>
     *   </complexContent>
     * </complexType>
     * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "") public static class Alcodon { @XmlAttribute(name = "pos1") protected BigInteger pos1; @XmlAttribute(name = "pos2") protected BigInteger pos2; @XmlAttribute(name = "pos3") protected BigInteger pos3; /** * Gets the value of the pos1 property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getPos1() { return pos1; } /** * Sets the value of the pos1 property. * * @param value * allowed object is * {@link BigInteger } * */ public void setPos1(BigInteger value) { this.pos1 = value; } /** * Gets the value of the pos2 property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getPos2() { return pos2; } /** * Sets the value of the pos2 property. * * @param value * allowed object is * {@link BigInteger } * */ public void setPos2(BigInteger value) { this.pos2 = value; } /** * Gets the value of the pos3 property. * * @return * possible object is * {@link BigInteger } * */ public BigInteger getPos3() { return pos3; } /** * Sets the value of the pos3 property. * * @param value * allowed object is * {@link BigInteger } * */ public void setPos3(BigInteger value) { this.pos3 = value; } } }