// // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. // Generated on: 2018.12.20 at 11:47:26 AM GMT // package jalview.xml.binding.jalview; import java.util.ArrayList; import java.util.List; import javax.xml.bind.annotation.XmlAccessType; import javax.xml.bind.annotation.XmlAccessorType; import javax.xml.bind.annotation.XmlAttribute; import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

 * <complexType>
 *   <complexContent>
 *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       <sequence>
 *         <element ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" maxOccurs="unbounded" minOccurs="0"/>
 *         <element name="label" type="{http://www.w3.org/2001/XMLSchema}string"/>
 *         <element name="description" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
 *         <element name="thresholdLine" minOccurs="0">
 *           <complexType>
 *             <complexContent>
 *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 <attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
 *                 <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
 *                 <attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
 *               </restriction>
 *             </complexContent>
 *           </complexType>
 *         </element>
 *         <element name="property" maxOccurs="unbounded" minOccurs="0">
 *           <complexType>
 *             <complexContent>
 *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
 *                 <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
 *               </restriction>
 *             </complexContent>
 *           </complexType>
 *         </element>
 *       </sequence>
 *       <attribute name="graph" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" />
 *       <attribute name="sequenceRef" type="{http://www.w3.org/2001/XMLSchema}string" />
 *       <attribute name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" />
 *       <attribute name="graphColour" type="{http://www.w3.org/2001/XMLSchema}int" />
 *       <attribute name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" />
 *       <attribute name="graphHeight" type="{http://www.w3.org/2001/XMLSchema}int" />
 *       <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
 *       <attribute name="scoreOnly" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
 *       <attribute name="score" type="{http://www.w3.org/2001/XMLSchema}double" />
 *       <attribute name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="centreColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="showAllColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
 *       <attribute name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
 *       <attribute name="belowAlignment" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
 *       <attribute name="calcId" type="{http://www.w3.org/2001/XMLSchema}string" />
 *     </restriction>
 *   </complexContent>
 * </complexType>
 * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "annotationElement", "label", "description", "thresholdLine", "property" }) @XmlRootElement(name = "Annotation") public class Annotation { protected List annotationElement; @XmlElement(required = true) protected String label; protected String description; protected Annotation.ThresholdLine thresholdLine; protected List property; @XmlAttribute(name = "graph", required = true) protected boolean graph; @XmlAttribute(name = "graphType") protected Integer graphType; @XmlAttribute(name = "sequenceRef") protected String sequenceRef; @XmlAttribute(name = "groupRef") protected String groupRef; @XmlAttribute(name = "graphColour") protected Integer graphColour; @XmlAttribute(name = "graphGroup") protected Integer graphGroup; @XmlAttribute(name = "graphHeight") protected Integer graphHeight; @XmlAttribute(name = "id") protected String id; @XmlAttribute(name = "scoreOnly") protected Boolean scoreOnly; @XmlAttribute(name = "score") protected Double score; @XmlAttribute(name = "visible") protected Boolean visible; @XmlAttribute(name = "centreColLabels") protected Boolean centreColLabels; @XmlAttribute(name = "scaleColLabels") protected Boolean scaleColLabels; @XmlAttribute(name = "showAllColLabels") protected Boolean showAllColLabels; @XmlAttribute(name = "autoCalculated") protected Boolean autoCalculated; @XmlAttribute(name = "belowAlignment") protected Boolean belowAlignment; @XmlAttribute(name = "calcId") protected String calcId; /** * Gets the value of the annotationElement property. * *

* This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. * This is why there is not a set method for the annotationElement property. * *

* For example, to add a new item, do as follows: *

     *    getAnnotationElement().add(newItem);
     * 
* * *

* Objects of the following type(s) are allowed in the list * {@link AnnotationElement } * * */ public List getAnnotationElement() { if (annotationElement == null) { annotationElement = new ArrayList(); } return this.annotationElement; } /** * Gets the value of the label property. * * @return * possible object is * {@link String } * */ public String getLabel() { return label; } /** * Sets the value of the label property. * * @param value * allowed object is * {@link String } * */ public void setLabel(String value) { this.label = value; } /** * Gets the value of the description property. * * @return * possible object is * {@link String } * */ public String getDescription() { return description; } /** * Sets the value of the description property. * * @param value * allowed object is * {@link String } * */ public void setDescription(String value) { this.description = value; } /** * Gets the value of the thresholdLine property. * * @return * possible object is * {@link Annotation.ThresholdLine } * */ public Annotation.ThresholdLine getThresholdLine() { return thresholdLine; } /** * Sets the value of the thresholdLine property. * * @param value * allowed object is * {@link Annotation.ThresholdLine } * */ public void setThresholdLine(Annotation.ThresholdLine value) { this.thresholdLine = value; } /** * Gets the value of the property property. * *

* This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. * This is why there is not a set method for the property property. * *

* For example, to add a new item, do as follows: *

     *    getProperty().add(newItem);
     * 
* * *

* Objects of the following type(s) are allowed in the list * {@link Annotation.Property } * * */ public List getProperty() { if (property == null) { property = new ArrayList(); } return this.property; } /** * Gets the value of the graph property. * */ public boolean isGraph() { return graph; } /** * Sets the value of the graph property. * */ public void setGraph(boolean value) { this.graph = value; } /** * Gets the value of the graphType property. * * @return * possible object is * {@link Integer } * */ public Integer getGraphType() { return graphType; } /** * Sets the value of the graphType property. * * @param value * allowed object is * {@link Integer } * */ public void setGraphType(Integer value) { this.graphType = value; } /** * Gets the value of the sequenceRef property. * * @return * possible object is * {@link String } * */ public String getSequenceRef() { return sequenceRef; } /** * Sets the value of the sequenceRef property. * * @param value * allowed object is * {@link String } * */ public void setSequenceRef(String value) { this.sequenceRef = value; } /** * Gets the value of the groupRef property. * * @return * possible object is * {@link String } * */ public String getGroupRef() { return groupRef; } /** * Sets the value of the groupRef property. * * @param value * allowed object is * {@link String } * */ public void setGroupRef(String value) { this.groupRef = value; } /** * Gets the value of the graphColour property. * * @return * possible object is * {@link Integer } * */ public Integer getGraphColour() { return graphColour; } /** * Sets the value of the graphColour property. * * @param value * allowed object is * {@link Integer } * */ public void setGraphColour(Integer value) { this.graphColour = value; } /** * Gets the value of the graphGroup property. * * @return * possible object is * {@link Integer } * */ public Integer getGraphGroup() { return graphGroup; } /** * Sets the value of the graphGroup property. * * @param value * allowed object is * {@link Integer } * */ public void setGraphGroup(Integer value) { this.graphGroup = value; } /** * Gets the value of the graphHeight property. * * @return * possible object is * {@link Integer } * */ public Integer getGraphHeight() { return graphHeight; } /** * Sets the value of the graphHeight property. * * @param value * allowed object is * {@link Integer } * */ public void setGraphHeight(Integer value) { this.graphHeight = value; } /** * Gets the value of the id property. * * @return * possible object is * {@link String } * */ public String getId() { return id; } /** * Sets the value of the id property. * * @param value * allowed object is * {@link String } * */ public void setId(String value) { this.id = value; } /** * Gets the value of the scoreOnly property. * * @return * possible object is * {@link Boolean } * */ public boolean isScoreOnly() { if (scoreOnly == null) { return false; } else { return scoreOnly; } } /** * Sets the value of the scoreOnly property. * * @param value * allowed object is * {@link Boolean } * */ public void setScoreOnly(Boolean value) { this.scoreOnly = value; } /** * Gets the value of the score property. * * @return * possible object is * {@link Double } * */ public Double getScore() { return score; } /** * Sets the value of the score property. * * @param value * allowed object is * {@link Double } * */ public void setScore(Double value) { this.score = value; } /** * Gets the value of the visible property. * * @return * possible object is * {@link Boolean } * */ public Boolean isVisible() { return visible; } /** * Sets the value of the visible property. * * @param value * allowed object is * {@link Boolean } * */ public void setVisible(Boolean value) { this.visible = value; } /** * Gets the value of the centreColLabels property. * * @return * possible object is * {@link Boolean } * */ public Boolean isCentreColLabels() { return centreColLabels; } /** * Sets the value of the centreColLabels property. * * @param value * allowed object is * {@link Boolean } * */ public void setCentreColLabels(Boolean value) { this.centreColLabels = value; } /** * Gets the value of the scaleColLabels property. * * @return * possible object is * {@link Boolean } * */ public Boolean isScaleColLabels() { return scaleColLabels; } /** * Sets the value of the scaleColLabels property. * * @param value * allowed object is * {@link Boolean } * */ public void setScaleColLabels(Boolean value) { this.scaleColLabels = value; } /** * Gets the value of the showAllColLabels property. * * @return * possible object is * {@link Boolean } * */ public Boolean isShowAllColLabels() { return showAllColLabels; } /** * Sets the value of the showAllColLabels property. * * @param value * allowed object is * {@link Boolean } * */ public void setShowAllColLabels(Boolean value) { this.showAllColLabels = value; } /** * Gets the value of the autoCalculated property. * * @return * possible object is * {@link Boolean } * */ public boolean isAutoCalculated() { if (autoCalculated == null) { return false; } else { return autoCalculated; } } /** * Sets the value of the autoCalculated property. * * @param value * allowed object is * {@link Boolean } * */ public void setAutoCalculated(Boolean value) { this.autoCalculated = value; } /** * Gets the value of the belowAlignment property. * * @return * possible object is * {@link Boolean } * */ public boolean isBelowAlignment() { if (belowAlignment == null) { return true; } else { return belowAlignment; } } /** * Sets the value of the belowAlignment property. * * @param value * allowed object is * {@link Boolean } * */ public void setBelowAlignment(Boolean value) { this.belowAlignment = value; } /** * Gets the value of the calcId property. * * @return * possible object is * {@link String } * */ public String getCalcId() { return calcId; } /** * Sets the value of the calcId property. * * @param value * allowed object is * {@link String } * */ public void setCalcId(String value) { this.calcId = value; } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

     * <complexType>
     *   <complexContent>
     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
     *     </restriction>
     *   </complexContent>
     * </complexType>
     * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "") public static class Property { @XmlAttribute(name = "name") protected String name; @XmlAttribute(name = "value") protected String value; /** * Gets the value of the name property. * * @return * possible object is * {@link String } * */ public String getName() { return name; } /** * Sets the value of the name property. * * @param value * allowed object is * {@link String } * */ public void setName(String value) { this.name = value; } /** * Gets the value of the value property. * * @return * possible object is * {@link String } * */ public String getValue() { return value; } /** * Sets the value of the value property. * * @param value * allowed object is * {@link String } * */ public void setValue(String value) { this.value = value; } } /** *

Java class for anonymous complex type. * *

The following schema fragment specifies the expected content contained within this class. * *

     * <complexType>
     *   <complexContent>
     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *       <attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
     *       <attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
     *     </restriction>
     *   </complexContent>
     * </complexType>
     * 
* * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "") public static class ThresholdLine { @XmlAttribute(name = "label") protected String label; @XmlAttribute(name = "value") protected Float value; @XmlAttribute(name = "colour") protected Integer colour; /** * Gets the value of the label property. * * @return * possible object is * {@link String } * */ public String getLabel() { return label; } /** * Sets the value of the label property. * * @param value * allowed object is * {@link String } * */ public void setLabel(String value) { this.label = value; } /** * Gets the value of the value property. * * @return * possible object is * {@link Float } * */ public Float getValue() { return value; } /** * Sets the value of the value property. * * @param value * allowed object is * {@link Float } * */ public void setValue(Float value) { this.value = value; } /** * Gets the value of the colour property. * * @return * possible object is * {@link Integer } * */ public Integer getColour() { return colour; } /** * Sets the value of the colour property. * * @param value * allowed object is * {@link Integer } * */ public void setColour(Integer value) { this.colour = value; } } }