/** * */ package uk.ac.vamsas.client; import java.lang.reflect.Field; import java.lang.reflect.InvocationTargetException; import java.lang.reflect.Method; import java.util.Iterator; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.exolab.castor.mapping.FieldDescriptor; import org.exolab.castor.mapping.FieldHandler; import org.exolab.castor.xml.util.XMLClassDescriptorImpl; import uk.ac.vamsas.test.simpleclient.VamsasArchive; /** * Base class for all Vamsas objects extracted from an IClientDocument. An * Vobject maybe registered or unregistered. * * @author jimp * */ public abstract class Vobject { static Log log = LogFactory.getLog(Vobject.class); /** * true if Vobject was stored in a vamsas Document or has been retrieved from it */ protected boolean __stored_in_document = false; /** * true if Vobject was updated since the vamsas library last read a Vobj with the same VorbaId from a document. */ protected boolean __updated_since_last_read = false; /** * true if Vobject appeared in the document after the last access by this vamsas library instance */ protected boolean __added_since_last_read = false; /** * memory of the last doHash() value computed for the Vobject * @see doHash() */ protected int __last_hash = 0; /** * set by testInstanceForIdField() if Vobject should have a VorbaId */ protected boolean registerable = false; protected boolean __visited = false; /** * reference to containing object for this Vobject. */ protected Vobject V_parent=null; /** * unique id for all vamsas objects allows unambiguous referencing to any * Vobject in the vamsas document */ protected VorbaId vorbaId = null; /** * the source of unique VorbaIds. */ protected IVorbaIdFactory __vorba = null; /* (non-Javadoc) * @see java.lang.Object#finalize() */ protected void finalize() throws Throwable { V_parent=null; __vorba=null; vorbaId=null; super.finalize(); } /** * */ protected Vobject() { super(); testInstanceForIdField(); } /** * Override Object.hashCode with base value for castor generated object hashcodes. */ public int hashCode() { return 17; } java.lang.reflect.Field ___id_field=null; // set to ease pain of reflection /** * set the isRegisterable flag based on the presence of a 'private String _id' field in * the reflected class instance. */ private void testInstanceForIdField() { // TODO: decide if 'id' is an appropriate reserved attribute name for the VorbaId // look for the id field in all castor classes (should be an NCName string) Class thisclass=this.getClass(); setRegisterable(false); while (!thisclass.equals(Vobject.class)) { try { java.lang.reflect.Field fd = thisclass.getDeclaredField("_id"); if (String.class.isAssignableFrom(fd.getType())) { ___id_field=fd; this.setRegisterable(true); break; } } catch (SecurityException e) { log.error("Unexpected Security Exception whilst finding id fields to set!",e); } catch (NoSuchFieldException e) { thisclass=thisclass.getSuperclass(); } } } // boolean __testedInstance=false; /** * update the Vobject instance's _id field, based on the contents of the * VorbaId. Only call this if you mean to do it! */ protected void setInstanceIdField() { /*if (!registerable && !__testedInstance) { testInstanceForIdField(); __testedInstance=true; }*/ if (registerable) { if (__vorba != null) try { Method fd = this.getClass().getMethod("setId", new Class[] { String.class }); fd.invoke((Object) this, new Object[] {new String(this.getVorbaId().id)}); log.debug(this.getClass().getName()+" called setInstanceIdField!"); } catch (InvocationTargetException e) { log.error("SourceGeneration of " + this.getClass().toString() + "\n has resulted in an inaccessible 'setId' method!\nCannot set ID from the vorbaId Vobject.", e); } catch (IllegalAccessException e) { log.error("SourceGeneration of " + this.getClass().toString() + "\n has resulted in an inaccessible 'setId' method!\nCannot set ID from the vorbaId Vobject.", e); } catch (SecurityException e) { log.error("Security access violation for "+this.getClass().toString(),e); } catch (NoSuchMethodException e) { log.warn(this.getClass().toString()+" was erroneously marked as a Vorba Vobject class (Implementation error?)"); this.setRegisterable(false); } } else { System.err.println("Client error. Trying to setInstanceIdField on a " + this.getClass().toString() + " (which cannot be given a vorbaId)"); } } protected String __getInstanceIdField() { /*if (!registerable && !__testedInstance) { testInstanceForIdField(); __testedInstance=true; }*/ if (registerable) { if (__vorba != null) try { Method fd = this.getClass().getMethod("getId", (Class[]) null); Object idstring = fd.invoke((Object) this, (Object[]) null); log.debug(this.getClass().getName()+" called getInstanceIdField!"); if (idstring!=null && idstring instanceof String) { if (((String) idstring).length()>0) return (String) idstring; } } catch (InvocationTargetException e) { log.error("SourceGeneration of " + this.getClass().toString() + "\n has resulted in an inaccessible 'getId' method!\nCannot set ID from the vorbaId Vobject.", e); } catch (IllegalAccessException e) { log.error("SourceGeneration of " + this.getClass().toString() + "\n has resulted in an inaccessible 'getId' method!\nCannot set ID from the vorbaId Vobject.", e); } catch (SecurityException e) { log.error("Security access violation for "+this.getClass().toString(),e); } catch (NoSuchMethodException e) { log.warn(this.getClass().toString()+" was erroneously marked as a Vorba Vobject class (Implementation error?)"); this.setRegisterable(false); } } else { System.err.println("Client error. Trying to getInstanceIdField on a " + this.getClass().toString() + " (which cannot be given a vorbaId)"); } return null; } /** * calls the castor-generated hashCode() method * @return */ protected int __callHash() { try { Method fd = this.getClass().getMethod("hashCode", (Class[]) null); Object hashvalue = fd.invoke((Object) this, (Object[]) null); if (log.isDebugEnabled()) log.debug(this.getClass().getName()+" called hashCode()!"); if (hashvalue!=null && hashvalue instanceof Integer) { return ((Integer) hashvalue).intValue(); } } catch (InvocationTargetException e) { log.error("SourceGeneration of " + this.getClass().toString() + "\n has resulted in an inaccessible 'hashCode' method!\nHave you set org.exolab.castor.builder.equalsmethod=true in castorbuilder.properties ?.", e); } catch (IllegalAccessException e) { log.error("SourceGeneration of " + this.getClass().toString() + "\n has resulted in an inaccessible 'hashCode' method!\nHave you set org.exolab.castor.builder.equalsmethod=true in castorbuilder.properties ?.", e); } catch (SecurityException e) { log.error("Security access violation for "+this.getClass().toString(),e); } catch (NoSuchMethodException e) { log.warn(this.getClass().toString()+" was erroneously extending from a Vorba Vobject class (Implementation error? no hashCode() method)" + "\nHave you set org.exolab.castor.builder.equalsmethod=true in castorbuilder.properties ?.", e); } return 0; } /** * calculate a hash for the Vobject with all housekeeping fields at standard * values. (isRegisterable is an immutable attribute property) * TODO: LATER: make this hash function compute a hash that truly reflects changes in Vobject attributes for benefit of update mechanism * @return true if new hash different to last hash (or first time its been computed) */ synchronized protected boolean doHash() { boolean stored = __stored_in_document; __stored_in_document=false; boolean updated = __updated_since_last_read; __updated_since_last_read=false; boolean added_since=__added_since_last_read; __added_since_last_read=false; long __old_hash = __last_hash; __last_hash = 0; // leave registerable - doesn't change boolean visited = __visited; __visited=false; Vobject _V_parent=V_parent; V_parent=null; VorbaId thisid = vorbaId; vorbaId = null; IVorbaIdFactory factory = __vorba; __vorba = null; java.lang.reflect.Field idfield = ___id_field; ___id_field=null; long l_hash = __l_hash; __l_hash = 0; // compute hash __last_hash = __callHash(); // reset houseskeeping variables ___id_field=idfield; vorbaId = thisid; __vorba = factory; __stored_in_document = stored; __updated_since_last_read=updated; V_parent=_V_parent; __visited=visited; __added_since_last_read=added_since; __l_hash = l_hash; // return true if first time hash was computed or if hash has changed return (__old_hash==0) || (__old_hash != __last_hash); } /** * TODO: combine two versions of the same collection Vobject to resolve * asynchronous updates to the same vamsas Vobject Merges two vamsas objects, * one of which is a later version of the earlier (ie they have the same * vorbaId but one is a later version recently read from the vamsasDocument * collection. * * @return */ protected boolean merge(Vobject laterCopy) { log.warn(this.getClass().getName()+".merge() not implemented."); return true; } /** * * @return true if Vobject is registered */ public boolean isRegistered() { return (registerable) ? (vorbaId != null) : false; } /** * Method to get fixed reference for the Vobject in the vamsas document. * * @returns null if Vobject is neither registered or not associated with a * properly instantiated VorbaIdFactory. */ public VorbaId getVorbaId() { if (registerable && vorbaId == null) { if (this.__stored_in_document) { if (__vorba!=null) vorbaId=uk.ac.vamsas.client.VorbaId.newId(this.__getInstanceIdField()); } // Try to use the associated factory. if (__vorba != null) if ((vorbaId = __vorba.makeVorbaId(this)) == null) return null; // Factory not valid. else { this.setInstanceIdField(); return vorbaId; } } return vorbaId; } /** * used by the IClient implementation to generate unique Id based on client * applications current namespace. */ protected void setVorbaId(VorbaId newid) { vorbaId = newid; } /** * @return true if Vobject is present in Vamsas Document. */ public boolean is__stored_in_document() { return __stored_in_document; } /** * @return true if this object has been updated in the currently stored document since the last time a Vobject with the same ID was read from a Vamsas Document */ public boolean isUpdated() { return __updated_since_last_read; } /** * * @return true if this object was added to the document after the last time the vamsas library acessed the session document */ public boolean isNewInDocument() { return __added_since_last_read; } /** * Set internal flag to indicate this object was updated since the last document read * @param __updated_since_last_read the __updated_since_last_read to set */ protected void set__updated_since_last_read(boolean __updated_since_last_read) { this.__updated_since_last_read = __updated_since_last_read; if(__updated_since_last_read && log.isDebugEnabled()) log.debug("Registered update for "+this.getVorbaId()); } /** * for use by Vorba agent to reflect state of vamsas Vobject to client * application. * Setting stored_in_document on a registerable Vobject without a * vorbaId will mean is will *never* get a vorbaId and * horrible things will happen. * @param __stored_in_document true if Vobject has been marshalled into current document. */ protected void set__stored_in_document(boolean __stored_in_document) { this.__stored_in_document = __stored_in_document; if(__stored_in_document && log.isDebugEnabled()) log.debug("Retrieved document object: "+this.getVorbaId()); } /** * @param __added_since_last_read the __added_since_last_read to set */ protected void set__added_since_last_read(boolean __added_since_last_read) { this.__added_since_last_read = __added_since_last_read; if(__added_since_last_read && log.isDebugEnabled()) log.debug("New object in document: "+this.getVorbaId()); } /** * __last_hash is the hash value computed when the Vobject was last checked * against a IClientDocument generated by the Vobject's parent IClient * instance. * * @return Returns the __last_hash. */ public long get__last_hash() { return __last_hash; } /** * @return true if Vobject can have a vorbaId */ public boolean isRegisterable() { return registerable; } /** * Called by __testInstanceForidField and the post-unmarshalling handler * to indicate if Vobject will have a vorbaId. * @param registerable */ protected void setRegisterable(boolean registerable) { this.registerable = registerable; } /** * ensure's internal id field corresponds to vorbaId and * cascade through all fields referring to an instance of Vobject * calling the same method on them. * TODO: LATER: properly apply castors own field mechanisms to get at accessors * TODO: FIX CYCLIC __ensure+instance_ids * Implementation note for the todo: * this works like a depth-first search over all vamsas objects in an vamsasDocument. * __visited is the visited flag, any Vobj who's flag is of a different parity * to the visited argument will be recursed on. * note - the doHash() function used to be used as the 'visited' flag - * this *is not* a valid heuristic, although it will work "most of the time". * TODO: LATER? Add another method for setDefaultProvenanceField (in the spirit of setInstanceIdField) using the info from the __vorba.getClient/User/Session methods */ protected void __ensure_instance_ids() { __ensure_instance_ids(!__visited); } protected void __ensure_instance_ids(boolean visited) { if (__vorba==null) throw new Error("Improperly intialised uk.ac.vamsas.client.Vobject - no VorbaFactory given."); log.debug("doing "+this.getClass()+".__ensure_instance_ids()"); if (!__stored_in_document && registerable) setInstanceIdField(); if (__visited==visited) return; __visited=visited; //__vorba.updateHashValue(this); Class descriptor = null; XMLClassDescriptorImpl descimpl = null; try { // castor descriptor resolver magic StringBuffer desname = new StringBuffer(this.getClass().getName()); desname.insert(desname.lastIndexOf("."), ".descriptors"); desname.append("Descriptor"); descriptor = this.getClass().getClassLoader().loadClass(desname.toString()); descimpl = (XMLClassDescriptorImpl) descriptor.getConstructor((Class[])null).newInstance((Object[])null); } catch (Exception e) { log.fatal("Source Generation Error!: Couldn't resolve descriptor for " +this.getClass().getName() +" was 'generate descriptors' set for castorbuilder.properties?"); return; } FieldDescriptor fields[] = descimpl.getFields(); for (int i=0,j=fields.length; i