/*
 * This class was automatically generated with 
 * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
 * Schema.
 * $Id$
 */

package uk.ac.vamsas.objects.core;

  //---------------------------------/
 //- Imported classes and packages -/
//---------------------------------/

import org.exolab.castor.mapping.AccessMode;
import org.exolab.castor.xml.TypeValidator;
import org.exolab.castor.xml.XMLFieldDescriptor;
import org.exolab.castor.xml.validators.*;

/**
 * Class AlignmentDescriptor.
 * 
 * @version $Revision$ $Date$
 */
public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {


      //--------------------------/
     //- Class/Member Variables -/
    //--------------------------/

    /**
     * Field nsPrefix
     */
    private java.lang.String nsPrefix;

    /**
     * Field nsURI
     */
    private java.lang.String nsURI;

    /**
     * Field xmlName
     */
    private java.lang.String xmlName;

    /**
     * Field identity
     */
    private org.exolab.castor.xml.XMLFieldDescriptor identity;


      //----------------/
     //- Constructors -/
    //----------------/

    public AlignmentDescriptor() 
     {
        super();
        nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";
        xmlName = "Alignment";
        
        //-- set grouping compositor
        setCompositorAsSequence();
        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
        org.exolab.castor.mapping.FieldHandler             handler        = null;
        org.exolab.castor.xml.FieldValidator               fieldValidator = null;
        //-- initialize attribute descriptors
        
        //-- _gapChar
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getGapChar();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.setGapChar( (java.lang.String) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setRequired(true);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _gapChar
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(1);
        { //-- local scope
            StringValidator typeValidator = new StringValidator();
            typeValidator.setWhiteSpace("preserve");
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _aligned
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                if(!target.hasAligned())
                    return null;
                return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteAligned();
                        return;
                    }
                    target.setAligned( ((java.lang.Boolean)value).booleanValue());
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _aligned
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            BooleanValidator typeValidator = new BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _id
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
        this.identity = desc;
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getId();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.setId( (java.lang.String) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return new java.lang.String();
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _id
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _modifiable
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_modifiable", "modifiable", org.exolab.castor.xml.NodeType.Attribute);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getModifiable();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.setModifiable( (java.lang.String) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _modifiable
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            StringValidator typeValidator = new StringValidator();
            typeValidator.setWhiteSpace("preserve");
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- initialize element descriptors
        
        //-- _alignmentAnnotationList
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AlignmentAnnotation.class, "_alignmentAnnotationList", "AlignmentAnnotation", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getAlignmentAnnotation();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.addAlignmentAnnotation( (uk.ac.vamsas.objects.core.AlignmentAnnotation) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return new uk.ac.vamsas.objects.core.AlignmentAnnotation();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
        desc.setMultivalued(true);
        addFieldDescriptor(desc);
        
        //-- validation code for: _alignmentAnnotationList
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(0);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _treeList
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getTree();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.addTree( (uk.ac.vamsas.objects.core.Tree) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return new uk.ac.vamsas.objects.core.Tree();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
        desc.setMultivalued(true);
        addFieldDescriptor(desc);
        
        //-- validation code for: _treeList
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(0);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _alignmentSequenceList
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getAlignmentSequence();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.addAlignmentSequence( (uk.ac.vamsas.objects.core.AlignmentSequence) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return new uk.ac.vamsas.objects.core.AlignmentSequence();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
        desc.setRequired(true);
        desc.setMultivalued(true);
        addFieldDescriptor(desc);
        
        //-- validation code for: _alignmentSequenceList
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(1);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _propertyList
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getProperty();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.addProperty( (uk.ac.vamsas.objects.core.Property) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return new uk.ac.vamsas.objects.core.Property();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
        desc.setMultivalued(true);
        addFieldDescriptor(desc);
        
        //-- validation code for: _propertyList
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(0);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _provenance
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Alignment target = (Alignment) object;
                return target.getProvenance();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Alignment target = (Alignment) object;
                    target.setProvenance( (uk.ac.vamsas.objects.core.Provenance) value);
                }
                catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance( java.lang.Object parent ) {
                return new uk.ac.vamsas.objects.core.Provenance();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
        desc.setRequired(true);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _provenance
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(1);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
    } //-- uk.ac.vamsas.objects.core.AlignmentDescriptor()


      //-----------/
     //- Methods -/
    //-----------/

    /**
     * Method getAccessMode
     * 
     * 
     * 
     * @return AccessMode
     */
    public org.exolab.castor.mapping.AccessMode getAccessMode()
    {
        return null;
    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() 

    /**
     * Method getExtends
     * 
     * 
     * 
     * @return ClassDescriptor
     */
    public org.exolab.castor.mapping.ClassDescriptor getExtends()
    {
        return null;
    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() 

    /**
     * Method getIdentity
     * 
     * 
     * 
     * @return FieldDescriptor
     */
    public org.exolab.castor.mapping.FieldDescriptor getIdentity()
    {
        return identity;
    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() 

    /**
     * Method getJavaClass
     * 
     * 
     * 
     * @return Class
     */
    public java.lang.Class getJavaClass()
    {
        return uk.ac.vamsas.objects.core.Alignment.class;
    } //-- java.lang.Class getJavaClass() 

    /**
     * Method getNameSpacePrefix
     * 
     * 
     * 
     * @return String
     */
    public java.lang.String getNameSpacePrefix()
    {
        return nsPrefix;
    } //-- java.lang.String getNameSpacePrefix() 

    /**
     * Method getNameSpaceURI
     * 
     * 
     * 
     * @return String
     */
    public java.lang.String getNameSpaceURI()
    {
        return nsURI;
    } //-- java.lang.String getNameSpaceURI() 

    /**
     * Method getValidator
     * 
     * 
     * 
     * @return TypeValidator
     */
    public org.exolab.castor.xml.TypeValidator getValidator()
    {
        return this;
    } //-- org.exolab.castor.xml.TypeValidator getValidator() 

    /**
     * Method getXMLName
     * 
     * 
     * 
     * @return String
     */
    public java.lang.String getXMLName()
    {
        return xmlName;
    } //-- java.lang.String getXMLName() 

}