/* * This class was automatically generated with * Castor 1.1, using an XML * Schema. * $Id$ */ package uk.ac.vamsas.objects.core.descriptors; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import uk.ac.vamsas.objects.core.Alignment; /** * Class AlignmentDescriptor. * * @version $Revision$ $Date$ */ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl { //--------------------------/ //- Class/Member Variables -/ //--------------------------/ /** * Field _elementDefinition. */ private boolean _elementDefinition; /** * Field _nsPrefix. */ private java.lang.String _nsPrefix; /** * Field _nsURI. */ private java.lang.String _nsURI; /** * Field _xmlName. */ private java.lang.String _xmlName; //----------------/ //- Constructors -/ //----------------/ public AlignmentDescriptor() { super(); _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"; _xmlName = "Alignment"; _elementDefinition = true; //-- set grouping compositor setCompositorAsSequence(); org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; org.exolab.castor.mapping.FieldHandler handler = null; org.exolab.castor.xml.FieldValidator fieldValidator = null; //-- initialize attribute descriptors //-- _gapChar desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getGapChar(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.setGapChar( (java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); //-- validation code for: _gapChar fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { //-- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); //-- _aligned desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; if (!target.hasAligned()) { return null; } return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; // if null, use delete method for optional primitives if (value == null) { target.deleteAligned(); return; } target.setAligned( ((java.lang.Boolean) value).booleanValue()); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); //-- validation code for: _aligned fieldValidator = new org.exolab.castor.xml.FieldValidator(); { //-- local scope org.exolab.castor.xml.validators.BooleanValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.BooleanValidator(); fieldValidator.setValidator(typeValidator); } desc.setValidator(fieldValidator); //-- _id desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute); super.setIdentity(desc); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getId(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.setId( (java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new java.lang.String(); } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); //-- validation code for: _id fieldValidator = new org.exolab.castor.xml.FieldValidator(); { //-- local scope org.exolab.castor.xml.validators.IdValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.IdValidator(); fieldValidator.setValidator(typeValidator); } desc.setValidator(fieldValidator); //-- _modifiable desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_modifiable", "modifiable", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getModifiable(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.setModifiable( (java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); //-- validation code for: _modifiable fieldValidator = new org.exolab.castor.xml.FieldValidator(); { //-- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); //-- initialize element descriptors //-- _alignmentAnnotationList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AlignmentAnnotation.class, "_alignmentAnnotationList", "AlignmentAnnotation", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getAlignmentAnnotation(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.addAlignmentAnnotation( (uk.ac.vamsas.objects.core.AlignmentAnnotation) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.removeAllAlignmentAnnotation(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.AlignmentAnnotation(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); //-- validation code for: _alignmentAnnotationList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { //-- local scope } desc.setValidator(fieldValidator); //-- _treeList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getTree(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.addTree( (uk.ac.vamsas.objects.core.Tree) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.removeAllTree(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Tree(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); //-- validation code for: _treeList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { //-- local scope } desc.setValidator(fieldValidator); //-- _alignmentSequenceList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getAlignmentSequence(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.addAlignmentSequence( (uk.ac.vamsas.objects.core.AlignmentSequence) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.removeAllAlignmentSequence(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.AlignmentSequence(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setRequired(true); desc.setMultivalued(true); addFieldDescriptor(desc); //-- validation code for: _alignmentSequenceList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { //-- local scope } desc.setValidator(fieldValidator); //-- _propertyList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getProperty(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.addProperty( (uk.ac.vamsas.objects.core.Property) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.removeAllProperty(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Property(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); //-- validation code for: _propertyList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { //-- local scope } desc.setValidator(fieldValidator); //-- _provenance desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue( java.lang.Object object ) throws IllegalStateException { Alignment target = (Alignment) object; return target.getProvenance(); } public void setValue( java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Alignment target = (Alignment) object; target.setProvenance( (uk.ac.vamsas.objects.core.Provenance) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Provenance(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); //-- validation code for: _provenance fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { //-- local scope } desc.setValidator(fieldValidator); } //-----------/ //- Methods -/ //-----------/ /** * Method getAccessMode. * * @return the access mode specified for this class. */ public org.exolab.castor.mapping.AccessMode getAccessMode( ) { return null; } /** * Method getIdentity. * * @return the identity field, null if this class has no * identity. */ public org.exolab.castor.mapping.FieldDescriptor getIdentity( ) { return super.getIdentity(); } /** * Method getJavaClass. * * @return the Java class represented by this descriptor. */ public java.lang.Class getJavaClass( ) { return uk.ac.vamsas.objects.core.Alignment.class; } /** * Method getNameSpacePrefix. * * @return the namespace prefix to use when marshaling as XML. */ public java.lang.String getNameSpacePrefix( ) { return _nsPrefix; } /** * Method getNameSpaceURI. * * @return the namespace URI used when marshaling and * unmarshaling as XML. */ public java.lang.String getNameSpaceURI( ) { return _nsURI; } /** * Method getValidator. * * @return a specific validator for the class described by this * ClassDescriptor. */ public org.exolab.castor.xml.TypeValidator getValidator( ) { return this; } /** * Method getXMLName. * * @return the XML Name for the Class being described. */ public java.lang.String getXMLName( ) { return _xmlName; } /** * Method isElementDefinition. * * @return true if XML schema definition of this Class is that * of a global * element or element with anonymous type definition. */ public boolean isElementDefinition( ) { return _elementDefinition; } }