/* * This file is part of the Vamsas Client version 0.1. * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, * Andrew Waterhouse and Dominik Lindner. * * Earlier versions have also been incorporated into Jalview version 2.4 * since 2008, and TOPALi version 2 since 2007. * * The Vamsas Client is free software: you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The Vamsas Client is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the Vamsas Client. If not, see . */ package uk.ac.vamsas.objects.core.descriptors; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import uk.ac.vamsas.objects.core.SequenceType; /** * Class SequenceTypeDescriptor. * * @version $Revision$ $Date$ */ public class SequenceTypeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * Field _elementDefinition. */ private boolean _elementDefinition; /** * Field _nsPrefix. */ private java.lang.String _nsPrefix; /** * Field _nsURI. */ private java.lang.String _nsURI; /** * Field _xmlName. */ private java.lang.String _xmlName; // ----------------/ // - Constructors -/ // ----------------/ public SequenceTypeDescriptor() { super(); _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"; _xmlName = "SequenceType"; _elementDefinition = false; // -- set grouping compositor setCompositorAsSequence(); org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; org.exolab.castor.mapping.FieldHandler handler = null; org.exolab.castor.xml.FieldValidator fieldValidator = null; // -- initialize attribute descriptors // -- _start desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.Long.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceType target = (SequenceType) object; if (!target.hasStart()) { return null; } return new java.lang.Long(target.getStart()); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; // ignore null values for non optional primitives if (value == null) { return; } target.setStart(((java.lang.Long) value).longValue()); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _start fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.LongValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.LongValidator(); fieldValidator.setValidator(typeValidator); } desc.setValidator(fieldValidator); // -- _end desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.Long.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceType target = (SequenceType) object; if (!target.hasEnd()) { return null; } return new java.lang.Long(target.getEnd()); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; // ignore null values for non optional primitives if (value == null) { return; } target.setEnd(((java.lang.Long) value).longValue()); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _end fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.LongValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.LongValidator(); fieldValidator.setValidator(typeValidator); } desc.setValidator(fieldValidator); // -- initialize element descriptors // -- _sequence desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_sequence", "sequence", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceType target = (SequenceType) object; return target.getSequence(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; target.setSequence((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _sequence fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _name desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceType target = (SequenceType) object; return target.getName(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; target.setName((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _name fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _description desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceType target = (SequenceType) object; return target.getDescription(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; target.setDescription((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _description fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _propertyList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { SequenceType target = (SequenceType) object; return target.getProperty(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; target.addProperty((uk.ac.vamsas.objects.core.Property) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { SequenceType target = (SequenceType) object; target.removeAllProperty(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Property(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _propertyList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); } // -----------/ // - Methods -/ // -----------/ /** * Method getAccessMode. * * @return the access mode specified for this class. */ public org.exolab.castor.mapping.AccessMode getAccessMode() { return null; } /** * Method getIdentity. * * @return the identity field, null if this class has no identity. */ public org.exolab.castor.mapping.FieldDescriptor getIdentity() { return super.getIdentity(); } /** * Method getJavaClass. * * @return the Java class represented by this descriptor. */ public java.lang.Class getJavaClass() { return uk.ac.vamsas.objects.core.SequenceType.class; } /** * Method getNameSpacePrefix. * * @return the namespace prefix to use when marshaling as XML. */ public java.lang.String getNameSpacePrefix() { return _nsPrefix; } /** * Method getNameSpaceURI. * * @return the namespace URI used when marshaling and unmarshaling as XML. */ public java.lang.String getNameSpaceURI() { return _nsURI; } /** * Method getValidator. * * @return a specific validator for the class described by this * ClassDescriptor. */ public org.exolab.castor.xml.TypeValidator getValidator() { return this; } /** * Method getXMLName. * * @return the XML Name for the Class being described. */ public java.lang.String getXMLName() { return _xmlName; } /** * Method isElementDefinition. * * @return true if XML schema definition of this Class is that of a global * element or element with anonymous type definition. */ public boolean isElementDefinition() { return _elementDefinition; } }