/* * This file is part of the Vamsas Client version 0.1. * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, * Andrew Waterhouse and Dominik Lindner. * * Earlier versions have also been incorporated into Jalview version 2.4 * since 2008, and TOPALi version 2 since 2007. * * The Vamsas Client is free software: you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The Vamsas Client is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the Vamsas Client. If not, see . */ package uk.ac.vamsas.objects.utils; public class SymbolDictionary { /** * defines standard names and properties for vamsas sequence dictionaries */ static final public String STANDARD_AA = "info:iubmb.org/aminoacids"; // strict // 1 // letter // code static final public String STANDARD_NA = "info:iubmb.org/nucleosides";// strict // 1 // letter // code // (do // not // allow // arbitrary // rare // nucleosides) /** * TODO: Vamsas Dictionary properties interface an interface for dictionary * provides : validation for a string symbolwidth (or symbol next/previous) * mappings to certain other dictionaries (one2three, etc) gap-character test * */ }