/**
 * Alignment.java
 *
 * This file was auto-generated from WSDL
 * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
 */

/*
* Jalview - A Sequence Alignment Editor and Viewer
* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
*/
package vamsas.objects.simple;

public class Alignment extends vamsas.objects.simple.Object
    implements java.io.Serializable {
    private java.lang.String gapchar;
    private java.lang.String[] method;
    private vamsas.objects.simple.SequenceSet seqs;
    private java.lang.Object __equalsCalc = null;
    private boolean __hashCodeCalc = false;

    public Alignment() {
    }

    public Alignment(java.lang.String gapchar, java.lang.String[] method,
        vamsas.objects.simple.SequenceSet seqs) {
        this.gapchar = gapchar;
        this.method = method;
        this.seqs = seqs;
    }

    /**
 * Gets the gapchar value for this Alignment.
 *
 * @return gapchar
 */
    public java.lang.String getGapchar() {
        return gapchar;
    }

    /**
 * Sets the gapchar value for this Alignment.
 *
 * @param gapchar
 */
    public void setGapchar(java.lang.String gapchar) {
        this.gapchar = gapchar;
    }

    /**
 * Gets the method value for this Alignment.
 *
 * @return method
 */
    public java.lang.String[] getMethod() {
        return method;
    }

    /**
 * Sets the method value for this Alignment.
 *
 * @param method
 */
    public void setMethod(java.lang.String[] method) {
        this.method = method;
    }

    /**
 * Gets the seqs value for this Alignment.
 *
 * @return seqs
 */
    public vamsas.objects.simple.SequenceSet getSeqs() {
        return seqs;
    }

    /**
 * Sets the seqs value for this Alignment.
 *
 * @param seqs
 */
    public void setSeqs(vamsas.objects.simple.SequenceSet seqs) {
        this.seqs = seqs;
    }

    public synchronized boolean equals(java.lang.Object obj) {
        if (!(obj instanceof Alignment)) {
            return false;
        }

        Alignment other = (Alignment) obj;

        if (obj == null) {
            return false;
        }

        if (this == obj) {
            return true;
        }

        if (__equalsCalc != null) {
            return (__equalsCalc == obj);
        }

        __equalsCalc = obj;

        boolean _equals;
        _equals = super.equals(obj) &&
            (((this.gapchar == null) && (other.getGapchar() == null)) ||
            ((this.gapchar != null) && this.gapchar.equals(other.getGapchar()))) &&
            (((this.method == null) && (other.getMethod() == null)) ||
            ((this.method != null) &&
            java.util.Arrays.equals(this.method, other.getMethod()))) &&
            (((this.seqs == null) && (other.getSeqs() == null)) ||
            ((this.seqs != null) && this.seqs.equals(other.getSeqs())));
        __equalsCalc = null;

        return _equals;
    }

    public synchronized int hashCode() {
        if (__hashCodeCalc) {
            return 0;
        }

        __hashCodeCalc = true;

        int _hashCode = super.hashCode();

        if (getGapchar() != null) {
            _hashCode += getGapchar().hashCode();
        }

        if (getMethod() != null) {
            for (int i = 0; i < java.lang.reflect.Array.getLength(getMethod());
                    i++) {
                java.lang.Object obj = java.lang.reflect.Array.get(getMethod(),
                        i);

                if ((obj != null) && !obj.getClass().isArray()) {
                    _hashCode += obj.hashCode();
                }
            }
        }

        if (getSeqs() != null) {
            _hashCode += getSeqs().hashCode();
        }

        __hashCodeCalc = false;

        return _hashCode;
    }
}