package fr.orsay.lri.varna.models; import java.awt.Point; import java.awt.geom.Point2D; import java.util.ArrayList; import javax.swing.undo.AbstractUndoableEdit; import javax.swing.undo.CannotRedoException; import javax.swing.undo.CannotUndoException; import javax.swing.undo.UndoableEdit; import fr.orsay.lri.varna.VARNAPanel; import fr.orsay.lri.varna.applications.templateEditor.GraphicalTemplateElement; import fr.orsay.lri.varna.applications.templateEditor.TemplatePanel; import fr.orsay.lri.varna.applications.templateEditor.TemplateEdits.ElementEdgeMoveTemplateEdit; import fr.orsay.lri.varna.exceptions.ExceptionNAViewAlgorithm; import fr.orsay.lri.varna.models.rna.ModeleBase; import fr.orsay.lri.varna.models.rna.ModeleBP; import fr.orsay.lri.varna.models.rna.RNA; public class VARNAEdits { public static final double MAX_DISTANCE= 55.0; public static class BasesShiftEdit extends AbstractUndoableEdit { private ArrayList _indices; private double _dx; private double _dy; private VARNAPanel _vp; public BasesShiftEdit(ArrayList indices, double dx, double dy, VARNAPanel p) { _indices = indices; _dx = dx; _dy = dy; _vp = p; } public void undo() throws CannotUndoException { for (int index: _indices) { ModeleBase mb = _vp.getRNA().getBaseAt(index); _vp.getRNA().setCoord(index,new Point2D.Double(mb.getCoords().x-_dx,mb.getCoords().y-_dy)); _vp.getRNA().setCenter(index,new Point2D.Double(mb.getCenter().x-_dx,mb.getCenter().y-_dy)); } _vp.repaint(); } public void redo() throws CannotRedoException { for (int index: _indices) { ModeleBase mb = _vp.getRNA().getBaseAt(index); _vp.getRNA().setCoord(index,new Point2D.Double(mb.getCoords().x+_dx,mb.getCoords().y+_dy)); _vp.getRNA().setCenter(index,new Point2D.Double(mb.getCenter().x-_dx,mb.getCenter().y-_dy)); } _vp.repaint(); } public boolean canUndo() { return true; } public boolean canRedo() { return true; } public String getPresentationName() { return "Base #"+_indices+" shifted"; } public boolean addEdit(UndoableEdit anEdit) { if (anEdit instanceof BasesShiftEdit) { BasesShiftEdit e = (BasesShiftEdit) anEdit; if (e._indices.equals(_indices)) { Point2D.Double tot = new Point2D.Double(_dx+e._dx,_dy+e._dy); if (tot.distance(0.0, 0.0)Math.PI) { totAngle -= 2.0*Math.PI; } if (Math.abs(totAngle).7 || cumFact<1.3) { _factor *= e._factor; return true; } } return false; } }; public static class RotateRNAEdit extends AbstractUndoableEdit { private double _angle; private VARNAPanel _vp; public RotateRNAEdit( double angle, VARNAPanel vp) { _angle = angle; _vp = vp; } public void undo() throws CannotUndoException { _vp.getRNA().globalRotation(-_angle); _vp.repaint(); } public void redo() throws CannotRedoException { _vp.getRNA().globalRotation(_angle); _vp.repaint(); } public boolean canUndo() { return true; } public boolean canRedo() { return true; } public String getPresentationName() { return "Rotate RNA angle:"+_angle+"";} public boolean addEdit(UndoableEdit anEdit) { if (anEdit instanceof RotateRNAEdit) { RotateRNAEdit e = (RotateRNAEdit) anEdit; if (Math.abs(_angle+e._angle)<30) { _angle += e._angle; return true; } } return false; } }; public static class RedrawEdit extends AbstractUndoableEdit { private int _prevMode; private int _newMode; private boolean _prevFlat; private boolean _newFlat; private ArrayList _backupCoords = new ArrayList(); private ArrayList _backupCenters = new ArrayList(); private VARNAPanel _vp; public RedrawEdit(VARNAPanel vp,boolean newFlat) { this(vp.getRNA().getDrawMode(),vp,newFlat); } public RedrawEdit(int newMode, VARNAPanel vp) { this(newMode,vp,vp.getFlatExteriorLoop()); } public RedrawEdit(int newMode, VARNAPanel vp, boolean newFlat) { _vp = vp; _newMode = newMode; _newFlat = newFlat; _prevFlat = _vp.getFlatExteriorLoop(); for (ModeleBase mb: _vp.getRNA().get_listeBases()) { _backupCoords.add(new Point2D.Double(mb.getCoords().x,mb.getCoords().y)); _backupCenters.add(new Point2D.Double(mb.getCenter().x,mb.getCenter().y)); } _prevMode = _vp.getDrawMode(); } public void undo() throws CannotUndoException { RNA r = _vp.getRNA(); _vp.setFlatExteriorLoop(_prevFlat); r.setDrawMode(_prevMode); for (int index =0;index<_vp.getRNA().get_listeBases().size();index++) { Point2D.Double oldCoord = _backupCoords.get(index); Point2D.Double oldCenter = _backupCenters.get(index); r.setCoord(index, oldCoord); r.setCenter(index, oldCenter); } _vp.repaint(); } public void redo() throws CannotRedoException { try { _vp.setFlatExteriorLoop(_newFlat); _vp.getRNA().drawRNA(_newMode,_vp.getConfig()); } catch (ExceptionNAViewAlgorithm e) { e.printStackTrace(); } _vp.repaint(); } public boolean canUndo() { return true; } public boolean canRedo() { return true; } public String getPresentationName() { return "Redraw whole RNA";} public boolean addEdit(UndoableEdit anEdit) { return false; } }; }