/**
 * 
 */
package jalview.ext.htsjdk;

import jalview.datamodel.SequenceI;

import java.io.File;

import org.junit.Assert;
import org.junit.Test;

/**
 * @author jprocter
 *
 */
public class TestHtsContigDb
{
  @Test
  public final void testHTSReferenceSequence() throws Exception
  {
    HtsContigDb remmadb = new HtsContigDb("REEMADB", new File(
            "D:\\Jims\\Jalview\\Reema\\pgmb.fasta"));

    Assert.assertTrue(remmadb.isValid());

    SequenceI sq = remmadb.getSequenceProxy("Deminut");
    Assert.assertNotNull(sq);
    Assert.assertNotEquals(0, sq.getLength());
  }

}