package jalview.ext.rbvi.chimera; import static org.testng.AssertJUnit.assertEquals; import static org.testng.AssertJUnit.assertTrue; import java.awt.Color; import java.util.Arrays; import java.util.LinkedHashMap; import java.util.List; import java.util.Map; import org.testng.annotations.Test; public class ChimeraCommandsTest { @Test(groups ={ "Functional" }) public void testAddColourRange() { Map>>> map = new LinkedHashMap>>>(); ChimeraCommands.addColourRange(map, Color.pink, 1, 2, 4, "A"); ChimeraCommands.addColourRange(map, Color.pink, 1, 8, 8, "A"); ChimeraCommands.addColourRange(map, Color.pink, 1, 5, 7, "B"); ChimeraCommands.addColourRange(map, Color.red, 1, 3, 5, "A"); ChimeraCommands.addColourRange(map, Color.red, 0, 1, 4, "B"); ChimeraCommands.addColourRange(map, Color.orange, 0, 5, 9, "C"); // three colours mapped assertEquals(3, map.keySet().size()); // Red has two models, Pink and Orange one each assertEquals(2, map.get(Color.red).keySet().size()); assertEquals(1, map.get(Color.orange).keySet().size()); assertEquals(1, map.get(Color.pink).keySet().size()); // pink model 1 has two chains, red.0 / red.1 / orange.0 one each assertEquals(2, map.get(Color.pink).get(1).keySet().size()); assertEquals(1, map.get(Color.red).get(0).keySet().size()); assertEquals(1, map.get(Color.red).get(1).keySet().size()); assertEquals(1, map.get(Color.orange).get(0).keySet().size()); // inspect positions List posList = map.get(Color.pink).get(1).get("A"); assertEquals(2, posList.size()); assertTrue(Arrays.equals(new int[] { 2, 4 }, posList.get(0))); assertTrue(Arrays.equals(new int[] { 8, 8 }, posList.get(1))); posList = map.get(Color.pink).get(1).get("B"); assertEquals(1, posList.size()); assertTrue(Arrays.equals(new int[] { 5, 7 }, posList.get(0))); posList = map.get(Color.red).get(0).get("B"); assertEquals(1, posList.size()); assertTrue(Arrays.equals(new int[] { 1, 4 }, posList.get(0))); posList = map.get(Color.red).get(1).get("A"); assertEquals(1, posList.size()); assertTrue(Arrays.equals(new int[] { 3, 5 }, posList.get(0))); posList = map.get(Color.orange).get(0).get("C"); assertEquals(1, posList.size()); assertTrue(Arrays.equals(new int[] { 5, 9 }, posList.get(0))); } @Test(groups ={ "Functional" }) public void testBuildColourCommands() { Map>>> map = new LinkedHashMap>>>(); ChimeraCommands.addColourRange(map, Color.blue, 0, 2, 5, "A"); ChimeraCommands.addColourRange(map, Color.blue, 0, 7, 7, "B"); ChimeraCommands.addColourRange(map, Color.blue, 0, 9, 23, "A"); ChimeraCommands.addColourRange(map, Color.blue, 1, 1, 1, "A"); ChimeraCommands.addColourRange(map, Color.blue, 1, 4, 7, "B"); ChimeraCommands.addColourRange(map, Color.yellow, 1, 8, 8, "A"); ChimeraCommands.addColourRange(map, Color.yellow, 1, 3, 5, "A"); ChimeraCommands.addColourRange(map, Color.red, 0, 3, 5, "A"); // Colours should appear in the Chimera command in the order in which // they were added; within colour, by model, by chain, and positions as // added String command = ChimeraCommands.buildColourCommands(map).get(0); assertEquals( "color #0000ff #0:2-5.A,9-23.A,7.B|#1:1.A,4-7.B; color #ffff00 #1:8.A,3-5.A; color #ff0000 #0:3-5.A", command); } }