LOCUS CH1L1CG 7502 bp DNA circular BCT 06-APR-2020 DEFINITION Chlamydia trachomatis plasmid pCHL1, complete sequence. ACCESSION J03321 VERSION J03321.1 DBLINK BioSample: SAMN14225621 KEYWORDS . SOURCE Chlamydia trachomatis ORGANISM Chlamydia trachomatis Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia. REFERENCE 1 (bases 1 to 7502) AUTHORS Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G. TITLE Diversity of the Chlamydia trachomatis common plasmid in biovars with different pathogenicity JOURNAL Plasmid 23 (2), 149-154 (1990) PUBMED 2194229 REFERENCE 2 (bases 1 to 7502) AUTHORS Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G. TITLE Direct Submission JOURNAL Submitted (23-JUN-2010) Sclavo Research Centre, Siena, Italy COMMENT Draft entry and computer-readable sequence kindly submitted by G.Ratti, 28-MAR-1990. ! CDS location split below (and this line added), for Jalview test purposes ! FEATURES Location/Qualifiers source 1..7502 /organism="Chlamydia trachomatis" /mol_type="genomic DNA" /serotype="D" /isolate="G0/86" /isolation_source="trachoma" /db_xref="taxon:813" /plasmid="pCHL1" CDS join(7022..7502, 1..437) /note="pGP7-D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91567.1" /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSL EILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLT KGYIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQ GIRKLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNG RVFVSKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMR ISCLSSRQSVCSYCSGEEVIPLVQTPTIL" CDS complement(488..1480) /note="pGP8-D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91568.1" /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEV IMHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKT SWTEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSL QTASFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQT EKRIIITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKI TPHVLRATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI" CDS 1579..2934 /note="pGP1-D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91569.1" /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCS HHKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVS HTVFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSI RSARGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKG NFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGE KLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFI DYLQLINSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSD LRDSGQIEQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKV W" CDS 2928..3992 /note="pGP2-D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91570.1" /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVI GLDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLE AYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTL SPIIRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPA NVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYIL RMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERF EEITKKSKEQMEQLEQESIN" CDS 4054..4848 /note="pGP3-D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91571.1" /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVA AKMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQ DILDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSG SMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTP TTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" CDS 4918..5226 /note="pGP4-D" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91572.1" /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLE LYHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE " CDS 5317..6048 /note="pGP5-D (gtg start codon)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91573.1" /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVY TSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICI IDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIAL SFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAED ILKLTHEIANILHIEYERDYSQRTT" CDS 6045..6788 /note="pGP6-D (gtg start codon)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA91574.1" /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQS LDRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDH FSSTTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKG DLKTKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEI LRIMCSGVSLSSYNENLLQQLFELFKQKS" repeat_region 6857..6945 /note="four tandem 22bp repeats" ORIGIN 1 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca 61 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat 121 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat 181 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg 241 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt 301 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt 361 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa 421 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac 481 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt 541 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc 601 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa 661 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca 721 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta 781 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct 841 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta 901 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg 961 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg 1021 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg 1081 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg 1141 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa 1201 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg 1261 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt 1321 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt 1381 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta 1441 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac 1501 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg 1561 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc 1621 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg 1681 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa 1741 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg 1801 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca 1861 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc 1921 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca 1981 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata 2041 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag 2101 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa 2161 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc 2221 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta 2281 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct 2341 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct 2401 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct 2461 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac 2521 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc 2581 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat 2641 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc 2701 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga 2761 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg 2821 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta 2881 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata 2941 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac 3001 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag 3061 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg 3121 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc 3181 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg 3241 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa 3301 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa 3361 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta 3421 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac 3481 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct 3541 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa 3601 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag 3661 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat 3721 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa 3781 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg 3841 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag 3901 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa 3961 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt 4021 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat 4081 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc 4141 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct 4201 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt 4261 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt 4321 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa 4381 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt 4441 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata 4501 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt 4561 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag 4621 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc 4681 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa 4741 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat 4801 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt 4861 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg 4921 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat 4981 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct 5041 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa 5101 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta 5161 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct 5221 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt 5281 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt 5341 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg 5401 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat 5461 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt 5521 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta 5581 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc 5641 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact 5701 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga 5761 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg 5821 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca 5881 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat 5941 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat 6001 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa 6061 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga 6121 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg 6181 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca 6241 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc 6301 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa 6361 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc 6421 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat 6481 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg 6541 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc 6601 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag 6661 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag 6721 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa 6781 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt 6841 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga 6901 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac 6961 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa 7021 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga 7081 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt 7141 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga 7201 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc 7261 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag 7321 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt 7381 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt 7441 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca 7501 ag //