##fileformat=VCFv4.2 ##INFO= ##contig= ##contig= ##contig= ##INFO= ##reference=test/jalview/io/vcf/contigs.fasta #CHROM POS ID REF ALT QUAL FILTER INFO contig123 8 . C A 81.96 . AC=1;AF=0.1 contig123 12 . G T 1666.64 . AC=1;AF=0.2 contig456 15 . T C 41.94 . AC=1;AF=0.3 contig789 2 . G T 224.23 . AC=1,2;AF=0 contig789 21 . G A 433.35 . AC=3;AF=0.6