package jalview.schemes; import static org.testng.Assert.assertEquals; import java.awt.Color; import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.Annotation; import jalview.datamodel.GraphLine; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; public class AnnotationColourGradientTest { final static int WIDTH = 11; final static int THRESHOLD = 5; private AlignmentAnnotation ann; Color minColour = new Color(50, 200, 150); Color maxColour = new Color(150, 100, 250); @BeforeClass public void setUp() { Annotation[] anns = new Annotation[WIDTH]; /* * set annotations with values 0-10 */ for (int col = 0; col < WIDTH; col++) { anns[col] = new Annotation("a", "a", 'a', col); } /* * AlignmentAnnotation constructor works out min-max range */ ann = new AlignmentAnnotation("", "", anns); ann.setThreshold(new GraphLine(THRESHOLD, "", Color.RED)); } @Test(groups = "Functional") public void testShadeCalculation_noThreshold() { AnnotationColourGradient testee = new AnnotationColourGradient(ann, minColour, maxColour, AnnotationColourGradient.NO_THRESHOLD); for (int col = 0; col < WIDTH; col++) { Color result = testee.shadeCalculation(ann, col); /* * column is n/10 of the way from minCol to maxCol */ Color expected = new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col); assertEquals(result, expected, "for column " + col); } } /** * Test the 'colour above threshold' case */ @Test(groups = "Functional") public void testShadeCalculation_aboveThreshold() { AnnotationColourGradient testee = new AnnotationColourGradient(ann, minColour, maxColour, AnnotationColourGradient.ABOVE_THRESHOLD); for (int col = 0; col < WIDTH; col++) { Color result = testee.shadeCalculation(ann, col); /* * colour is derived regardless of the threshold value * (the renderer that will suppress colouring if * above/below threshold) */ Color expected = new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col); assertEquals(result, expected, "for column " + col); } /* * now make 6-10 the span of the colour range * (annotation value == column number in this test) */ testee.setThresholdIsMinMax(true); for (int col = 0; col < THRESHOLD; col++) { /* * colours below the threshold are computed as before */ Color expected = new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col); Color result = testee.shadeCalculation(ann, col); assertEquals(result, expected, "for column " + col); } for (int col = THRESHOLD; col < WIDTH; col++) { /* * colours for values >= threshold are graduated * range is 6-10 so steps of 100/5 = 20 */ int factor = col - THRESHOLD; Color expected = new Color(50 + 20 * factor, 200 - 20 * factor, 150 + 20 * factor); Color result = testee.shadeCalculation(ann, col); assertEquals(result, expected, "for column " + col); } } /** * Test the 'colour below threshold' case */ @Test(groups = "Functional") public void testShadeCalculation_belowThreshold() { /* * change threshold to 5 so we have an easy calculation of * the min-max range 0-5 */ int threshold = 5; ann.setThreshold(new GraphLine(threshold, "", Color.RED)); AnnotationColourGradient testee = new AnnotationColourGradient(ann, minColour, maxColour, AnnotationColourGradient.BELOW_THRESHOLD); for (int col = 0; col < WIDTH; col++) { Color result = testee.shadeCalculation(ann, col); /* * colour is derived regardless of the threshold value * (the renderer that will suppress colouring if * above/below threshold) */ Color expected = new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col); assertEquals(result, expected, "for column " + col); } /* * now make 0-5 the span of the colour range * (annotation value == column number in this test) */ testee.setThresholdIsMinMax(true); for (int col = threshold + 1; col < WIDTH; col++) { /* * colours above the threshold are computed as before */ Color expected = new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col); Color result = testee.shadeCalculation(ann, col); assertEquals(result, expected, "for column " + col); } for (int col = 0; col <= threshold; col++) { /* * colours for values <= threshold are graduated * range is 0-5 so steps of 100/5 = 20 */ Color expected = new Color(50 + 20 * col, 200 - 20 * col, 150 + 20 * col); Color result = testee.shadeCalculation(ann, col); assertEquals(result, expected, "for column " + col); } } }