/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemes; import static org.testng.Assert.assertEquals; import java.awt.Color; import org.testng.annotations.Test; public class HydrophobicColourSchemeTest { /** * Turn colours are based on the scores in ResidueProperties.hyd A = 1.8, R = * -4.5, N = -3.5, D = -3.5... min = -3.9 max = 4.5 *

* scores are scaled to c 0-1 between min and max and colour is (c, 0, 1-c) */ @Test(groups = "Functional") public void testFindColour() { ScoreColourScheme scheme = new HydrophobicColourScheme(); float min = -3.9f; float max = 4.5f; float a = (1.8f - min) / (max - min); assertEquals(scheme.findColour('A', 0, null), new Color(a, 0, 1 - a)); float d = (-3.5f - min) / (max - min); assertEquals(scheme.findColour('D', 0, null), new Color(d, 0, 1 - d)); assertEquals(scheme.findColour('-', 0, null), Color.WHITE); } }