/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemes; import static org.testng.AssertJUnit.assertEquals; import jalview.gui.JvOptionPane; import java.awt.Color; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; public class UserColourSchemeTest { @BeforeClass(alwaysRun = true) public void setUpJvOptionPane() { JvOptionPane.setInteractiveMode(false); JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); } @Test(groups = "Functional") public void testParseAppletParameter() { UserColourScheme cs = new UserColourScheme("white"); cs.parseAppletParameter("D,E=red; K,R,H=0022FF; c=10 , 20,30"); assertEquals(Color.RED, cs.findColour('D')); assertEquals(Color.RED, cs.findColour('d')); assertEquals(Color.RED, cs.findColour('E')); assertEquals(Color.RED, cs.findColour('e')); Color c1 = new Color(0x0022ff); assertEquals(c1, cs.findColour('K')); assertEquals(c1, cs.findColour('R')); assertEquals(c1, cs.findColour('h')); Color c2 = new Color(10, 20, 30); assertEquals(c2, cs.findColour('c')); assertEquals(Color.WHITE, cs.findColour('G')); assertEquals(Color.WHITE, cs.findColour('-')); assertEquals(Color.WHITE, cs.findColour('.')); assertEquals(Color.WHITE, cs.findColour(' ')); cs = new UserColourScheme("white"); cs.parseAppletParameter( "D,E=red; K,R,H=0022FF; c=10 , 20,30;t=orange;lowercase=blue;s=pink"); assertEquals(Color.RED, cs.findColour('D')); assertEquals(Color.blue, cs.findColour('d')); assertEquals(Color.RED, cs.findColour('E')); assertEquals(Color.blue, cs.findColour('e')); assertEquals(c1, cs.findColour('K')); assertEquals(c1, cs.findColour('R')); assertEquals(Color.blue, cs.findColour('h')); assertEquals(c2, cs.findColour('c')); // 'lowercase' sets all lower-case not already set to the given colour assertEquals(Color.orange, cs.findColour('t')); assertEquals(Color.blue, cs.findColour('k')); assertEquals(Color.blue, cs.findColour('a')); assertEquals(Color.pink, cs.findColour('s')); } @Test(groups = "Functional") public void testToAppletParameter() { UserColourScheme cs = new UserColourScheme( "E,D=red; K,R,H=0022FF; c=10 , 20,30"); String param = cs.toAppletParameter(); assertEquals("D,E=ff0000;H,K,R=0022ff;c=0a141e", param); } /** * Test for user colour scheme constructed with a colour per residue, * including gap. Note this can currently be done from the User Defined * Colours dialog, but not by parsing a colours parameter, as * parseAppletParameter only recognises amino acid codes. */ @Test(groups = "Functional") public void testConstructor_coloursArray() { Color g = Color.green; Color y = Color.yellow; Color b = Color.blue; Color r = Color.red; // colours for ARNDCQEGHILKMFPSTWYVBZ and gap Color[] colours = new Color[] { g, y, b, r, g, y, r, b, g, y, r, b, g, y, r, b, g, y, r, b, g, y, r, g }; UserColourScheme cs = new UserColourScheme(colours); assertEquals(g, cs.findColour('A')); assertEquals(b, cs.findColour('n')); assertEquals(g, cs.findColour('-')); assertEquals(g, cs.findColour('.')); assertEquals(g, cs.findColour(' ')); } }