compbio.data.sequence
Enum Program

java.lang.Object
  extended by java.lang.Enum<Program>
      extended by compbio.data.sequence.Program
All Implemented Interfaces:
Serializable, Comparable<Program>

public enum Program
extends Enum<Program>

The list of programmes that can produce alignments

Author:
pvtroshin

Enum Constant Summary
CLUSTAL
          ClustalW
MAFFT
          Mafft
MUSCLE
          Muscle
Probcons
          Probcons
Tcoffee
          Tcoffee
 
Method Summary
static Program valueOf(String name)
          Returns the enum constant of this type with the specified name.
static Program[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

CLUSTAL

public static final Program CLUSTAL
ClustalW


MAFFT

public static final Program MAFFT
Mafft


MUSCLE

public static final Program MUSCLE
Muscle


Tcoffee

public static final Program Tcoffee
Tcoffee


Probcons

public static final Program Probcons
Probcons

Method Detail

values

public static Program[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (Program c : Program.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static Program valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null