compbio.data.sequence
Enum Program

java.lang.Object
  java.lang.Enum<Program>
      compbio.data.sequence.Program

All Implemented Interfaces:

Serializable, Comparable<Program>

public enum Program
extends Enum<Program>

The list of programmes that can produce alignments

Author:

pvtroshin

Enum Constant Summary

CLUSTAL
ClustalW

MAFFT
Mafft

MUSCLE
Muscle

Probcons
Probcons

Tcoffee
Tcoffee

Method Summary

static Program	valueOf(String name) Returns the enum constant of this type with the specified name.
static Program[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

CLUSTAL

public static final Program CLUSTAL

ClustalW

MAFFT

public static final Program MAFFT

Mafft

MUSCLE

public static final Program MUSCLE

Muscle

Tcoffee

public static final Program Tcoffee

Tcoffee

Probcons

public static final Program Probcons

Probcons

Method Detail

values

public static Program[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Program c : Program.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Program valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null