Uses of Class
compbio.data.sequence.Alignment

Packages that use Alignment
compbio.data.msa Web Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.data.sequence A data model for multiple sequence alignment web services and utility methods that work on the objects of this model. 
 

Uses of Alignment in compbio.data.msa
 

Methods in compbio.data.msa that return Alignment
 Alignment MsaWS.getResult(String jobId)
          Return the result of the job.
 

Uses of Alignment in compbio.data.sequence
 

Methods in compbio.data.sequence that return Alignment
static Alignment ClustalAlignmentUtil.readClustalFile(File file)
           
static Alignment ClustalAlignmentUtil.readClustalFile(InputStream instream)
          Read Clustal formatted alignment.
 

Methods in compbio.data.sequence with parameters of type Alignment
static void ClustalAlignmentUtil.writeClustalAlignment(OutputStream outStream, Alignment alignment)
          Write Clustal formatted alignment Limitations: does not record the consensus.