Uses of Class
compbio.data.sequence.Alignment

Packages that use Alignment

compbio.data.sequence

A data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.

Uses of Alignment in compbio.data.sequence

Methods in compbio.data.sequence that return Alignment

static Alignment	ClustalAlignmentUtil.readClustalFile(java.io.File file)
static Alignment	ClustalAlignmentUtil.readClustalFile(java.io.InputStream instream) Read Clustal formatted alignment.

Methods in compbio.data.sequence with parameters of type Alignment

static void

ClustalAlignmentUtil.writeClustalAlignment(java.io.OutputStream outStream, Alignment alignment) Write Clustal formatted alignment Limitations: does not record the consensus.