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P

Parameter<T> - Class in compbio.metadata
A single value containing an option supported by the web service e.g.
Parameter(String, String) - Constructor for class compbio.metadata.Parameter
 
Preset<T> - Class in compbio.metadata
Collection of Options and Parameters with their values
Preset() - Constructor for class compbio.metadata.Preset
 
presetAlign(List<FastaSequence>, Preset<T>) - Method in interface compbio.data.msa.MsaWS
Align a list of sequences with preset.
presetAnalize(List<FastaSequence>, Preset<T>) - Method in interface compbio.data.msa.Annotation
Analyse the sequences according to the preset settings.
PresetManager<T> - Class in compbio.metadata
Collection of presets and methods to manipulate them @see Preset
PresetManager() - Constructor for class compbio.metadata.PresetManager
 
Program - Enum in compbio.data.sequence
The list of programmes that can produce alignments
pullExecStatistics(String, long) - Method in interface compbio.data.msa.JManagement
Reads 1kb chunk from the statistics file which is specific to a given web service from the position.

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