A C D E F G H I J L M N O P R S T U V W

P

Parameter<T> - Class in compbio.metadata

A single value containing an option supported by the web service e.g.

Parameter(String, String) - Constructor for class compbio.metadata.Parameter

Preset<T> - Class in compbio.metadata

Collection of Options and Parameters with their values

Preset() - Constructor for class compbio.metadata.Preset

PresetAlign - Class in compbio.data.msa.jaxws

PresetAlign() - Constructor for class compbio.data.msa.jaxws.PresetAlign

presetAlign(List<FastaSequence>, Preset<T>) - Method in interface compbio.data.msa.MsaWS

Align a list of sequences with preset.

PresetAlignResponse - Class in compbio.data.msa.jaxws

PresetAlignResponse() - Constructor for class compbio.data.msa.jaxws.PresetAlignResponse

PresetAnalize - Class in compbio.data.msa.jaxws

PresetAnalize() - Constructor for class compbio.data.msa.jaxws.PresetAnalize

presetAnalize(List<FastaSequence>, Preset<T>) - Method in interface compbio.data.msa.SequenceAnnotation

Analyse the sequences according to the preset settings.

PresetAnalizeResponse - Class in compbio.data.msa.jaxws

PresetAnalizeResponse() - Constructor for class compbio.data.msa.jaxws.PresetAnalizeResponse

PresetManager<T> - Class in compbio.metadata

Collection of presets and methods to manipulate them @see Preset

PresetManager() - Constructor for class compbio.metadata.PresetManager

PROBCONS_INFO - Static variable in enum compbio.ws.client.Services

Program - Enum in compbio.data.sequence

The list of programmes that can produce alignments

PullExecStatistics - Class in compbio.data.msa.jaxws

PullExecStatistics() - Constructor for class compbio.data.msa.jaxws.PullExecStatistics

pullExecStatistics(String, long) - Method in interface compbio.data.msa.JManagement

Reads 1kb chunk from the statistics file which is specific to a given web service from the position.

PullExecStatisticsResponse - Class in compbio.data.msa.jaxws

PullExecStatisticsResponse() - Constructor for class compbio.data.msa.jaxws.PullExecStatisticsResponse