A C D E F G H I J L M N O P R S T U V W

W

WHITE_SPACE - Static variable in class compbio.data.sequence.SequenceUtil
A whitespace character: [\t\n\x0B\f\r]
writeClustalAlignment(OutputStream, Alignment) - Static method in class compbio.data.sequence.ClustalAlignmentUtil
Write Clustal formatted alignment Limitations: does not record the consensus.
writeFasta(OutputStream, List<FastaSequence>, int) - Static method in class compbio.data.sequence.SequenceUtil
Writes list of FastaSequeces into the outstream formatting the sequence so that it contains width chars on each line
writeFasta(OutputStream, List<FastaSequence>) - Static method in class compbio.data.sequence.SequenceUtil
Writes FastaSequence in the file, each sequence will take one line only
writeFastaKeepTheStream(OutputStream, List<FastaSequence>, int) - Static method in class compbio.data.sequence.SequenceUtil
 
WrongParameterException - Exception in compbio.metadata
WrongParameterException is thrown wherever the RunnerConfig object does not match the actual runnable or then attempting to set the value of Argument to invalid value.
WrongParameterException(Option<?>) - Constructor for exception compbio.metadata.WrongParameterException
 
WrongParameterException(String) - Constructor for exception compbio.metadata.WrongParameterException
 
WrongParameterException(Throwable) - Constructor for exception compbio.metadata.WrongParameterException
 
WrongParameterException(String, Throwable) - Constructor for exception compbio.metadata.WrongParameterException
 
WSTester - Class in compbio.ws.client
Class for testing web services
WSTester() - Constructor for class compbio.ws.client.WSTester
 

A C D E F G H I J L M N O P R S T U V W