A C D E F G H I J L M N O P R S T U V W

F

fastaAlignment - Static variable in class compbio.ws.client.WSTester

fastaInput - Static variable in class compbio.ws.client.WSTester

Sequences to be used as input for all WS

FastaReader - Class in compbio.data.sequence

Reads files with FASTA formatted sequences.

FastaReader(String) - Constructor for class compbio.data.sequence.FastaReader

Header data can contain non-ASCII symbols and read in UTF8

FastaReader(InputStream) - Constructor for class compbio.data.sequence.FastaReader

This class will not close the incoming stream! So the client should do so.

FastaSequence - Class in compbio.data.sequence

A FASTA formatted sequence.

FastaSequence(String, String) - Constructor for class compbio.data.sequence.FastaSequence

Upon construction the any whitespace characters are removed from the sequence

from - Variable in class compbio.data.sequence.Range