A C D E F G H I J L M N O P R S T U V W

I

id - Variable in class compbio.data.sequence.ScoreManager.ScoreHolder

IOHelper - Class in compbio.ws.client

IOHelper() - Constructor for class compbio.ws.client.IOHelper

isAmbiguosProtein(String) - Static method in class compbio.data.sequence.SequenceUtil

Check whether the sequence confirms to amboguous protein sequence

isDefault() - Method in class compbio.metadata.Limit

isExceeded(List<FastaSequence>) - Method in class compbio.metadata.Limit

Checks if the number of sequences or their average length in the dataset exceeds this limit.

isNonAmbNucleotideSequence(String) - Static method in class compbio.data.sequence.SequenceUtil

Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one (!) - B char

isNucleotideSequence(FastaSequence) - Static method in class compbio.data.sequence.SequenceUtil

IsOperating - Class in compbio.data.msa.jaxws

IsOperating() - Constructor for class compbio.data.msa.jaxws.IsOperating

isOperating(Services) - Method in interface compbio.data.msa.RegistryWS

Check whether a particular web service is working on this server

IsOperatingResponse - Class in compbio.data.msa.jaxws

IsOperatingResponse() - Constructor for class compbio.data.msa.jaxws.IsOperatingResponse

isProteinSequence(String) - Static method in class compbio.data.sequence.SequenceUtil

isRequired() - Method in class compbio.metadata.Option

Flag that indicated that this option must be specified in the command line for an executable to run

isReturn() - Method in class compbio.data.msa.jaxws.CancelJobResponse

isReturn() - Method in class compbio.data.msa.jaxws.IsOperatingResponse

isValidClustalFile(InputStream) - Static method in class compbio.data.sequence.ClustalAlignmentUtil

Please note this method closes the input stream provided as a parameter

IUPRED_INFO - Static variable in enum compbio.ws.client.Services