Uses of Class
compbio.metadata.UnsupportedRuntimeException

Packages that use UnsupportedRuntimeException

Package	Description
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.engine.client
compbio.ws.client	A command line client and web services testing client for JAva Bioinformatics Analysis Web Services.
compbio.ws.server

Uses of UnsupportedRuntimeException in compbio.data.msa

Methods in compbio.data.msa that throw UnsupportedRuntimeException

Modifier and Type	Method and Description
java.lang.String	MsaWS.align(java.util.List<FastaSequence> sequences) Align a list of sequences with default settings.
java.lang.String	SequenceAnnotation.analize(java.util.List<FastaSequence> sequences) Analyse the sequences.
java.lang.String	MsaWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options) Align a list of sequences with options.
java.lang.String	SequenceAnnotation.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options) Analyse the sequences according to custom settings defined in options list.
java.lang.String	MsaWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<T> preset) Align a list of sequences with preset.
java.lang.String	SequenceAnnotation.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset) Analyse the sequences according to the preset settings.

Uses of UnsupportedRuntimeException in compbio.engine.client

Methods in compbio.engine.client that throw UnsupportedRuntimeException

Modifier and Type	Method and Description
java.lang.String	ConfExecutable.getCommand(Executable.ExecProvider provider)

Uses of UnsupportedRuntimeException in compbio.ws.client

Methods in compbio.ws.client that throw UnsupportedRuntimeException

Modifier and Type	Method and Description
private <T> boolean	WSTester.presetAlign(MsaWS<T> msaws, java.util.List<Preset<T>> presets) Calls alignment with preset
private <T> void	WSTester.testMetadata(Metadata<T> msaws)

Uses of UnsupportedRuntimeException in compbio.ws.server

Methods in compbio.ws.server that throw UnsupportedRuntimeException

Modifier and Type	Method and Description
java.lang.String	SequenceAnnotationService.analize(java.util.List<FastaSequence> sequences)
java.lang.String	AAConWS.analize(java.util.List<FastaSequence> sequences)
java.lang.String	RNAalifoldWS.analize(java.util.List<FastaSequence> sequences)
java.lang.String	AAConWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<AACon>> options)
java.lang.String	DisemblWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<Disembl>> options)
java.lang.String	GlobPlotWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<GlobPlot>> options)
java.lang.String	RNAalifoldWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<RNAalifold>> options)
java.lang.String	SequenceAnnotationService.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options)
java.lang.String	AAConWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<AACon> preset)
java.lang.String	DisemblWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<Disembl> preset)
java.lang.String	GlobPlotWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<GlobPlot> preset)
java.lang.String	IUPredWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<IUPred> preset)
java.lang.String	RNAalifoldWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<RNAalifold> preset)
java.lang.String	SequenceAnnotationService.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset)