Uses of Class
compbio.runner.msa.MSAprobs

Packages that use MSAprobs

Package	Description
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

Uses of MSAprobs in compbio.runner.msa

Methods in compbio.runner.msa that return MSAprobs

Modifier and Type	Method and Description
MSAprobs	MSAprobs.setInput(java.lang.String inFile)

Methods in compbio.runner.msa that return types with arguments of type MSAprobs

Modifier and Type	Method and Description
java.lang.Class<MSAprobs>	MSAprobs.getType()

Uses of MSAprobs in compbio.ws.server

Fields in compbio.ws.server with type parameters of type MSAprobs

Modifier and Type	Field and Description
private static LimitsManager<MSAprobs>	MSAprobsWS.limitMan
private static RunnerConfig<MSAprobs>	MSAprobsWS.MSAprobsOptions

Methods in compbio.ws.server that return types with arguments of type MSAprobs

Modifier and Type	Method and Description
Limit<MSAprobs>	MSAprobsWS.getLimit(java.lang.String presetName)
LimitsManager<MSAprobs>	MSAprobsWS.getLimits()
PresetManager<MSAprobs>	MSAprobsWS.getPresets()
RunnerConfig<MSAprobs>	MSAprobsWS.getRunnerOptions()
(package private) ConfiguredExecutable<MSAprobs>	MSAprobsWS.init(java.util.List<FastaSequence> dataSet)

Method parameters in compbio.ws.server with type arguments of type MSAprobs

Modifier and Type	Method and Description
java.lang.String	MSAprobsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<MSAprobs>> options)
java.lang.String	MSAprobsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<MSAprobs> preset)