Uses of Class
compbio.runner.msa.Probcons

Packages that use Probcons

Package	Description
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

Uses of Probcons in compbio.runner.msa

Methods in compbio.runner.msa that return Probcons

Modifier and Type	Method and Description
Probcons	Probcons.setInput(java.lang.String inFile)

Methods in compbio.runner.msa that return types with arguments of type Probcons

Modifier and Type	Method and Description
java.lang.Class<Probcons>	Probcons.getType()

Uses of Probcons in compbio.ws.server

Fields in compbio.ws.server with type parameters of type Probcons

Modifier and Type	Field and Description
private static LimitsManager<Probcons>	ProbconsWS.limitMan
private static RunnerConfig<Probcons>	ProbconsWS.probconsOptions

Methods in compbio.ws.server that return types with arguments of type Probcons

Modifier and Type	Method and Description
Limit<Probcons>	ProbconsWS.getLimit(java.lang.String presetName)
LimitsManager<Probcons>	ProbconsWS.getLimits()
PresetManager<Probcons>	ProbconsWS.getPresets()
RunnerConfig<Probcons>	ProbconsWS.getRunnerOptions()
(package private) ConfiguredExecutable<Probcons>	ProbconsWS.init(java.util.List<FastaSequence> dataSet)

Method parameters in compbio.ws.server with type arguments of type Probcons

Modifier and Type	Method and Description
java.lang.String	ProbconsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<Probcons>> options)
java.lang.String	ProbconsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Probcons> preset)