Align
Alignment
AlignmentMetadata
AlignResponse
Argument
AsyncExecutor
AsyncJobRunner
AsyncLocalRunner
BlastAll
BlastParameters
BlastParser
CancelJob
CancelJobResponse
ChunkHolder
Cleaner
ClustalAlignmentUtil
ClustalW
ClustalWS
ClusterJobId
ClusterNativeSpecExecutable
ClusterSession
ClusterUtil
CommandBuilder
ConfExecutable
Configurator
ConfiguredExecutable
CustomAlign
CustomAlignResponse
DirectoryManager
Disembl
Environment
EnvVariableProcessor
Executable
Executable.ExecProvider
ExecutableWrapper
FastaSequence
FilePuller
GetJobStatus
GetJobStatusResponse
GetLimit
GetLimitResponse
GetLimits
GetLimitsResponse
GetPresets
GetPresetsResponse
GetProgress
GetProgressResponse
GetResult
GetResultResponse
GetRunnerOptions
GetRunnerOptionsResponse
JnetAnnotation
Job
JobExecutionException
JobExecutionExceptionBean
JobRunner
JobStatus
JobSubmissionException
JobSubmissionExceptionBean
Jpred4
JpredAnnotation
JpredResult
Jws2Client
Jws2Client.Services
Limit
LimitExceededException
LimitExceededExceptionBean
LimitsManager
LoadBalancer
LocalEngineUtil
LocalExecutorService
LocalRunner
Mafft
MafftWS
Mcl
MsaWS
Muscle
MuscleWS
NetNglyc
OB
Option
OptionCombinator
Pairwise
Parameter
PathValidator
PipedExecutable
Preset
PresetAlign
PresetAlignResponse
PresetManager
Probcons
ProbconsWS
Program
ProgressGetter
PropertyHelperManager
PScore
PSIBlast
PsiBlast
PulledFileCache
PullExecStatistics
PullExecStatisticsResponse
PullFile
PullFileResponse
ResultNotAvailableException
ResultNotAvailableExceptionBean
Ronn
RPSBlast
RunConfiguration
RunnerConfig
RunnerConfigMarshaller
Runners
SequenceUtil
SimpleWSPublisher
SkeletalExecutable
StatisticManager
StreamGobbler
SubmissionManager
SyncExecutor
Tcoffee
TcoffeeWS
UnknownFileFormatException
UnsupportedRuntimeException
UnsupportedRuntimeExceptionBean
Util
Util
ValueConstrain
ValueConstrain.Type
WrongParameterException
WrongParameterExceptionBean
WSTester
WSUtil
_DrmaaExample
_JobStatus
_Jpred
_Key
_NativeSpecHelper
_Queue
_QueueConstraints
_SkeletalCommandBuilder
_TrackingExecutor
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