Uses of Package
compbio.data.sequence

Packages that use compbio.data.sequence

compbio.data.msa
compbio.data.msa.jaxws
compbio.data.sequence	A data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.engine
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.pipeline._jpred
compbio.runner	Utilities commonly used by all runners.
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

Classes in compbio.data.sequence used by compbio.data.msa

Alignment
Multiple sequence alignment.

FastaSequence
A FASTA formatted sequence.

Classes in compbio.data.sequence used by compbio.data.msa.jaxws

Alignment
Multiple sequence alignment.

FastaSequence
A FASTA formatted sequence.

Classes in compbio.data.sequence used by compbio.data.sequence

Alignment
Multiple sequence alignment.

AlignmentMetadata
Alignment metadata e.g.

FastaSequence
A FASTA formatted sequence.

Program
Programmes that can produce alignments

UnknownFileFormatException

Classes in compbio.data.sequence used by compbio.engine

FastaSequence
A FASTA formatted sequence.

Classes in compbio.data.sequence used by compbio.metadata

FastaSequence
A FASTA formatted sequence.

Classes in compbio.data.sequence used by compbio.pipeline._jpred

FastaSequence
A FASTA formatted sequence.

Classes in compbio.data.sequence used by compbio.runner

Alignment
Multiple sequence alignment.

FastaSequence
A FASTA formatted sequence.

UnknownFileFormatException

Classes in compbio.data.sequence used by compbio.runner.msa

Alignment
Multiple sequence alignment.

Classes in compbio.data.sequence used by compbio.ws.server

Alignment
Multiple sequence alignment.

FastaSequence
A FASTA formatted sequence.