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| Packages that use compbio.engine.client | |
|---|---|
| compbio.engine | |
| compbio.engine.client | Classes and interfaces representing an input for engines. |
| compbio.engine.cluster.drmaa | An cluster engine classes responsible for execution of Executables on the clusters. |
| compbio.engine.conf | Classes commonly used by both engines. |
| compbio.engine.local | An local engine classes responsible for execution of Executables on the local computer (the same machine as JVM running these classes). |
| compbio.runner | Utilities commonly used by all runners. |
| compbio.runner._impl | |
| compbio.runner.msa | Wrappers for native executables for multiple sequence alignment (msa) |
| compbio.runner.psiblast | |
| compbio.ws.server | |
| Classes in compbio.engine.client used by compbio.engine | |
|---|---|
| ConfiguredExecutable
|
|
| Executable
Interface to a native executable. |
|
| Executable.ExecProvider
|
|
| Classes in compbio.engine.client used by compbio.engine.client | |
|---|---|
| CommandBuilder
|
|
| ConfExecutable
|
|
| ConfiguredExecutable
|
|
| Executable
Interface to a native executable. |
|
| Executable.ExecProvider
|
|
| PipedExecutable
This is a marker interface to indicate that the output of the process must be captured. |
|
| RunConfiguration
Value class for persisting ConfExecutable instances |
|
| SkeletalExecutable
|
|
| Classes in compbio.engine.client used by compbio.engine.cluster.drmaa | |
|---|---|
| ConfiguredExecutable
|
|
| Classes in compbio.engine.client used by compbio.engine.conf | |
|---|---|
| Executable
Interface to a native executable. |
|
| Classes in compbio.engine.client used by compbio.engine.local | |
|---|---|
| ConfiguredExecutable
|
|
| Classes in compbio.engine.client used by compbio.runner | |
|---|---|
| CommandBuilder
|
|
| Executable
Interface to a native executable. |
|
| Executable.ExecProvider
|
|
| RunConfiguration
Value class for persisting ConfExecutable instances |
|
| Classes in compbio.engine.client used by compbio.runner._impl | |
|---|---|
| CommandBuilder
|
|
| Executable
Interface to a native executable. |
|
| Executable.ExecProvider
|
|
| RunConfiguration
Value class for persisting ConfExecutable instances |
|
| Classes in compbio.engine.client used by compbio.runner.msa | |
|---|---|
| ClusterNativeSpecExecutable
|
|
| CommandBuilder
|
|
| Executable
Interface to a native executable. |
|
| Executable.ExecProvider
|
|
| PipedExecutable
This is a marker interface to indicate that the output of the process must be captured. |
|
| SkeletalExecutable
|
|
| Classes in compbio.engine.client used by compbio.runner.psiblast | |
|---|---|
| Executable
Interface to a native executable. |
|
| SkeletalExecutable
|
|
| Classes in compbio.engine.client used by compbio.ws.server | |
|---|---|
| ConfiguredExecutable
|
|
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