compbio.engine.local
Class ExecutableWrapper

java.lang.Object
  compbio.engine.local.ExecutableWrapper

All Implemented Interfaces:

Callable<ConfiguredExecutable<?>>

@Immutable
public final class ExecutableWrapper
extends Object
implements Callable<ConfiguredExecutable<?>>

Field Summary

static String	PROC_ERR_FILE
static String	PROC_OUT_FILE

Constructor Summary

ExecutableWrapper(ConfiguredExecutable<?> executable, String workDirectory)

Method Summary

ConfiguredExecutable<?>	call() It is vital that output and error streams are captured immediately for this call() to succeed.
static void	shutdownService() Stops internal executor service which captures streams of native executables.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROC_OUT_FILE

public static final String PROC_OUT_FILE

See Also:

Constant Field Values

PROC_ERR_FILE

public static final String PROC_ERR_FILE

See Also:

Constant Field Values

Constructor Detail

ExecutableWrapper

public ExecutableWrapper(ConfiguredExecutable<?> executable,
                         String workDirectory)
                  throws JobSubmissionException

Throws:

JobSubmissionException

Method Detail

shutdownService

public static final void shutdownService()

Stops internal executor service which captures streams of native executables. This method is intended for stopping service if deployed in the web application content. There is NO NEED of using this method otherwise as the executor service is taken care of internally.

call

public ConfiguredExecutable<?> call()
                             throws IOException

It is vital that output and error streams are captured immediately for this call() to succeed. Thus each instance if ExecutableWrapper has 2 its own thread ready to capture the output. If executor could not execute capture immediately this could lead to the call method to stale, as execution could not proceed without output being captured. Every call to call() method will use 2 threads

Specified by:

call in interface Callable<ConfiguredExecutable<?>>

Throws:

IOException