Uses of Class
compbio.metadata.Limit

Packages that use Limit

compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.engine.client
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.runner	Utilities commonly used by all runners.
compbio.runner._impl
compbio.ws.server

Uses of Limit in compbio.data.msa

Methods in compbio.data.msa that return Limit

Limit<T>

Metadata.getLimit(String presetName) Get a Limit for a preset.

Uses of Limit in compbio.data.msa.jaxws

Methods in compbio.data.msa.jaxws that return Limit

Limit

GetLimitResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type Limit

void	GetLimitResponse.setReturn(Limit _return)

Uses of Limit in compbio.engine.client

Methods in compbio.engine.client that return Limit

Limit<T>	Executable.getLimit(String presetName)
Limit<T>	SkeletalExecutable.getLimit(String presetName)
Limit<T>	ConfExecutable.getLimit(String presetName)

Uses of Limit in compbio.metadata

Methods in compbio.metadata that return Limit

Limit<T>	LimitsManager.getDefaultLimit()
Limit<T>	LimitsManager.getLimitByName(String presetName)

Methods in compbio.metadata that return types with arguments of type Limit

List<Limit<T>>

LimitsManager.getLimits()

Methods in compbio.metadata with parameters of type Limit

static LimitExceededException

LimitExceededException.newLimitExceeded(Limit<?> limit, List<FastaSequence> seqs)

Uses of Limit in compbio.runner

Methods in compbio.runner that return Limit

Limit<_SkeletalCommandBuilder>

_SkeletalCommandBuilder.getLimit(String presetName) Deprecated.

Uses of Limit in compbio.runner._impl

Methods in compbio.runner._impl that return Limit

Limit<NetNglyc>

NetNglyc.getLimit(String presetName)

Uses of Limit in compbio.ws.server

Methods in compbio.ws.server that return Limit

Limit<T>	GenericMetadataService.getLimit(String presetName)
Limit<ClustalW>	ClustalWS.getLimit(String presetName)
Limit<Muscle>	MuscleWS.getLimit(String presetName)
Limit<Mafft>	MafftWS.getLimit(String presetName)
Limit<Tcoffee>	TcoffeeWS.getLimit(String presetName)
Limit<Probcons>	ProbconsWS.getLimit(String presetName)
Limit<ClustalO>	ClustalOWS.getLimit(String presetName)

Methods in compbio.ws.server with parameters of type Limit

static <T> String	WSUtil.align(List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger logger, String callingMethod, Limit<T> limit)
static <T> String	WSUtil.analize(List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger log, String method, Limit<T> limit)