Uses of Class
compbio.metadata.Preset

Packages that use Preset

compbio.data.msa
compbio.data.msa.jaxws
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.ws.server

Uses of Preset in compbio.data.msa

Methods in compbio.data.msa with parameters of type Preset

java.lang.String

MsaWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<T> preset) Align a list of sequences with preset.

Uses of Preset in compbio.data.msa.jaxws

Methods in compbio.data.msa.jaxws that return Preset

Preset

PresetAlign.getPreset()

Methods in compbio.data.msa.jaxws with parameters of type Preset

void	PresetAlign.setPreset(Preset preset)

Uses of Preset in compbio.metadata

Methods in compbio.metadata that return Preset

Preset<T>

PresetManager.getPresetByName(java.lang.String presetName)

Methods in compbio.metadata that return types with arguments of type Preset

java.util.List<Preset<T>>

PresetManager.getPresets()

Method parameters in compbio.metadata with type arguments of type Preset

void	PresetManager.setPresets(java.util.List<Preset<T>> presets)

Uses of Preset in compbio.ws.server

Methods in compbio.ws.server with parameters of type Preset

java.lang.String	ClustalWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<ClustalW> preset)
java.lang.String	MafftWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Mafft> preset)
java.lang.String	MuscleWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Muscle> preset)
java.lang.String	ProbconsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Probcons> preset)
java.lang.String	TcoffeeWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Tcoffee> preset)