compbio.runner._impl
Class Mcl

java.lang.Object
  compbio.runner._SkeletalCommandBuilder
      compbio.runner._impl.Mcl

All Implemented Interfaces:

Executable<_SkeletalCommandBuilder>

public class Mcl
extends _SkeletalCommandBuilder

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Constructor Summary

Mcl(String workDirectory)

Method Summary

String	getCommand(Executable.ExecProvider provider)
String	getCommandName()
List<String>	getCreatedFiles()
String	getInput()
static String	getTestCommand()
static List<String>	getTestParams()

Methods inherited from class compbio.runner._SkeletalCommandBuilder

addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mcl

public Mcl(String workDirectory)

Method Detail

getTestParams

public static List<String> getTestParams()

getCommand

public String getCommand(Executable.ExecProvider provider)

getTestCommand

public static String getTestCommand()

getCommandName

public String getCommandName()

getCreatedFiles

public List<String> getCreatedFiles()

getInput

public String getInput()