compbio.runner._impl
Class PSIBlast

java.lang.Object
  compbio.runner._SkeletalCommandBuilder
      compbio.runner._impl.PSIBlast

All Implemented Interfaces:

Executable<_SkeletalCommandBuilder>

public class PSIBlast
extends _SkeletalCommandBuilder

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Constructor Summary

PSIBlast(String workDirectory)

Method Summary

String	getCommand(Executable.ExecProvider provider)
String	getCommandName()
List<String>	getCreatedFiles()
String	getInput()
boolean	removeOutput(String outfile)

Methods inherited from class compbio.runner._SkeletalCommandBuilder

addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PSIBlast

public PSIBlast(String workDirectory)

Method Detail

removeOutput

public boolean removeOutput(String outfile)

getCommand

public String getCommand(Executable.ExecProvider provider)

getCommandName

public String getCommandName()

getCreatedFiles

public List<String> getCreatedFiles()

getInput

public String getInput()