compbio.runner._impl
Class RPSBlast

java.lang.Object
  compbio.runner._SkeletalCommandBuilder
      compbio.runner._impl.RPSBlast

All Implemented Interfaces:

Executable<_SkeletalCommandBuilder>

public class RPSBlast
extends _SkeletalCommandBuilder

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Constructor Summary

RPSBlast(String workDirectory)

Method Summary

String	getCommand(Executable.ExecProvider provider)
static String	getCommandName()
List<String>	getCreatedFiles()
String	getInput()
static String	getTestCommand()

Methods inherited from class compbio.runner._SkeletalCommandBuilder

addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RPSBlast

public RPSBlast(String workDirectory)

Method Detail

getCommand

public String getCommand(Executable.ExecProvider provider)

getTestCommand

public static String getTestCommand()

getCommandName

public static String getCommandName()

getCreatedFiles

public List<String> getCreatedFiles()

getInput

public String getInput()