compbio.runner.psiblast
Class PsiBlast

java.lang.Object
  compbio.engine.client.SkeletalExecutable<PsiBlast>
      compbio.runner.psiblast.PsiBlast

All Implemented Interfaces:

Executable<PsiBlast>

public class PsiBlast
extends SkeletalExecutable<PsiBlast>

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Constructor Summary

PsiBlast()

Method Summary

Limit<PsiBlast>	getLimit(java.lang.String presetName)
LimitsManager<PsiBlast>	getLimits()
<V> V	getResults(java.lang.String directory)
java.lang.Class<? extends Executable<?>>	getType()

Methods inherited from class compbio.engine.client.SkeletalExecutable

addParameters, equals, getClusterSettings, getCreatedFiles, getError, getInput, getOutput, getParameters, hashCode, loadRunConfiguration, setError, setInput, setOutput, setParameter, toString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PsiBlast

public PsiBlast()

Method Detail

getResults

public <V> V getResults(java.lang.String directory)
             throws ResultNotAvailableException

Throws:

ResultNotAvailableException

getLimit

public Limit<PsiBlast> getLimit(java.lang.String presetName)

getLimits

public LimitsManager<PsiBlast> getLimits()

getType

public java.lang.Class<? extends Executable<?>> getType()

Specified by:

getType in class SkeletalExecutable<PsiBlast>