Constant Field Values

Contents

• compbio.data.*
• compbio.engine.*
• compbio.metadata.*
• compbio.runner.*

compbio.data.*

compbio.data.sequence.ClustalAlignmentUtil

public static final char

gapchar

45

compbio.engine.*

compbio.engine.client.ConfExecutable<T>

public static final java.lang.String

CLUSTER_TASK_ID_PREFIX

"@"

compbio.engine.client.EnvVariableProcessor

public static final java.lang.String

PATH

"PATH"

compbio.engine.client.RunConfiguration

public static final java.lang.String

rconfigFile

"RunnerConfig.xml"

compbio.engine.cluster.drmaa.ClusterSession

public static final java.lang.String

JOBID

"JOBID"

compbio.engine.cluster.dundee._QueueConstraints

public static final int	FIRST_MEMORY_LIMIT	14000
public static final int	LONG_TIME_LIMIT	24
public static final int	MAX_MEMORY_LIMIT	30000
public static final int	SHORT_TIME_LIMIT	8

compbio.engine.conf._Key

public static final java.lang.String

DELIM

"#"

compbio.engine.conf.DirectoryManager

public static final java.lang.String

DELIM

"#"

compbio.engine.local.ExecutableWrapper

public static final java.lang.String	PROC_ERR_FILE	"procError.txt"
public static final java.lang.String	PROC_OUT_FILE	"procOutput.txt"

compbio.metadata.*

compbio.metadata.PresetManager<T>

public static final java.lang.String

LOCAL_ENGINE_LIMIT_PRESET

"# LocalEngineExecutionLimit #"

compbio.runner.*

compbio.runner.Util

public static final java.lang.String

SPACE

" "

compbio.runner.msa.ClustalW

public static final java.lang.String

KEY_VALUE_SEPARATOR

"="

compbio.runner.msa.Mafft

public static final java.lang.String

KEY_VALUE_SEPARATOR

" "

compbio.runner.msa.Muscle

public static final java.lang.String

KEY_VALUE_SEPARATOR

" "

compbio.runner.msa.Probcons

public static final java.lang.String

KEY_VALUE_SEPARATOR

" "

compbio.runner.msa.Tcoffee

public static final java.lang.String

KEY_VALUE_SEPARATOR

"="