Packages

compbio.data._structure
compbio.data.msa
compbio.data.msa.jaxws
compbio.data.sequence	A data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.engine
compbio.engine.client	Classes and interfaces representing an input for engines.
compbio.engine.cluster.drmaa	An cluster engine classes responsible for execution of Executables on the clusters.
compbio.engine.cluster.dundee
compbio.engine.conf	Classes commonly used by both engines.
compbio.engine.local	An local engine classes responsible for execution of Executables on the local computer (the same machine as JVM running these classes).
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.pipeline._jpred
compbio.runner	Utilities commonly used by all runners.
compbio.runner._impl
compbio.runner._jpred
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.runner.psiblast
compbio.ws.client
compbio.ws.server