generate vamsas-client-j1.5.jar artefact

[vamsas.git] / schemas / document.xml

diff --git a/schemas/document.xml b/schemas/document.xml
index 7113ae1..168172a 100644 (file)
--- a/schemas/document.xml
+++ b/schemas/document.xml
@@ -1,4 +1,25 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <VamsasDocument xmlns="http://www.vamsas.ac.uk/vamsasDocument"
      xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
      xsi:schemaLocation="http://www.vamsas.ac.uk/vamsasDocument file:vamsasDocument.xsd">
@@ -53,6 +74,21 @@
                 <name>Q87N22</name>
             </Sequence>
             <Alignment gapChar="-">
+                <AlignmentAnnotation type="recombinationbreakpoint" graph="false">
+                    <seg start="1" end="163" inclusive="false"/>
+                    <annotationElement position="50" after="true">
+                        <description>Topali Breakpoint</description>
+                        <glyph dict="utf8">?</glyph>
+                    </annotationElement>
+                    <Provenance>
+                        <entry>
+                            <User>Jim</User>
+                            <App>topali</App>
+                            <Action>added-by hand</Action>
+                            <Date>2006-09-11</Date>
+                        </entry>
+                    </Provenance>
+                </AlignmentAnnotation>
                 <alignmentSequence start="1" end="167" refid="a1127235554296">
                     <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLN--INVIAVQGDISNYKECEKIIKAALDKFNG--IDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
                     <name>Q899P0</name>