<VamsasDocument xmlns="http://www.vamsas.ac.uk/vamsasDocument"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://www.vamsas.ac.uk/vamsasDocument file:/homes/jimp/prj/new-eclipse/VamsasClient/schemas/vamsasDocument.xsd">
- <Version></Version>
- <LockFile></LockFile>
- <Provenance xmlns="http://www.vamsas.org"></Provenance>
+ <Version>alpha</Version>
+ <LockFile>some kind of resolvable session reference.</LockFile>
+ <Provenance xmlns="http://www.vamsas.org">
+ <entry>
+ <User>Jim</User>
+ <App>Jalview</App>
+ <Action>updated the xml schema</Action>
+ <Date>2006-01-17</Date>
+ </entry>
+ </Provenance>
<VAMSAS xmlns="http://www.vamsas.org"></VAMSAS>
<VAMSAS xmlns="http://www.vamsas.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.vamsas.org
http://www.vamsas.ac.uk/build/VamsasClient/schemas/vamsas.xsd">
<DataSet>
- <Sequence start="1" end="167" id="a1127235554296">
+ <Sequence start="1" end="167" dictionary="vamsas:aa" id="a1127235554296">
<sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLNINVIAVQGDISNYKECEKIIKAALDKFNGIDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
<name>Q899P0</name>
</Sequence>
- <Sequence start="1" end="168" id="a1127235554297">
+ <Sequence start="1" end="168" dictionary="vamsas:aa" id="a1127235554297">
<sequence>KIAIVTGASSGIGRAIAFKLASRGANLILGDVKIDELRKVAEEIAKETKVKVIPLYVNVGDFNSTKEFYNKGISELGVDYVDILVNNAGINRDALFVKMTYEQWDEVIKVDLYSMFNMTKQVVDMVKRNYGRIINISSLSWLGNIGQANYSAAKAGVIGFTKTLAREL</sequence>
<name>Q972M3</name>
</Sequence>
- <Sequence start="1" end="167" id="a1127235554298">
+ <Sequence start="1" end="167" dictionary="vamsas:aa" id="a1127235554298">
<sequence>KVIVITGASSGIGEQVAMQVAEQGATPVLMARTEEKLKALADKIKETYNTPCYYYVLDVSEETEVQSVFSKVLQEVGRIDILVNNAGFGIFKTFEDASMDEVKDMFQVNVFGLVACTKAVLPYMVKRNGHIINIASLAGKIATPKSSAYAATKHAVLGFTNSLRMEL</sequence>
<name>Q81M93</name>
</Sequence>
- <Sequence start="1" end="167" id="a1127235554299">
+ <Sequence start="1" end="167" dictionary="vamsas:aa" id="a1127235554299">
<sequence>KIALVTGAMGGLGTAICQALAKDGCIVAANCLPNFEPAAAWLGQQEALGFKFYVAEGDVSDFESCKAMVAKIEADLGPVDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAEL</sequence>
<name>NODG_AZOBR</name>
</Sequence>
- <Sequence start="1" end="166" id="a1127235554300">
+ <Sequence start="1" end="166" dictionary="vamsas:aa" id="a1127235554300">
<sequence>QTAVVTGGGKGIGRAICLALAREGADIVIAARTEKDIRETARMVEKEGRKALPVSTDIRVEEDVENMISEAVDAFGRIDILVNNAGVAYRKYMVETSTEEYDNIMDTNLKGMFFCTKYALPYLLKREGRIINISSGAGKHGIPKLSIYSASKFAVIGFTESIAYEI</sequence>
<name>Q8PS57</name>
</Sequence>
- <Sequence start="1" end="167" id="a1127235554301">
+ <Sequence start="1" end="167" dictionary="vamsas:aa" id="a1127235554301">
<sequence>KTAIVTGAARGIGKAIALKFAAEGANIAFTDLVIDENAEKTRVELEAMGVKAKGYASNAANFEDTAKVVEEIHKDFGRIDILVNNAGITRDGLMMRMSEQQWDMVINVNLKSAFNFIHACTPMMRQKAGSIINMASVVGVHGNAGQANYAASKAGMIALAKSIAQEL</sequence>
<name>Q8A195</name>
</Sequence>
- <Sequence start="1" end="164" id="a1127235554302">
+ <Sequence start="1" end="164" dictionary="vamsas:aa" id="a1127235554302">
<sequence>KVVVVTGAGSGIGEATAKRFAHEGASVVLVGRNQEKLAKVAAQLKGAEHLIRATDVADLTDVEALFKEVAERFGRLDVLVNNAGVVKSGKVTELGVEDWKAVMSVDLDGVFYCTRTAMPALIASKGNIINVSSVSGLGGDWGMSFYNAAKGAITNFTRALALD</sequence>
<name>Q888G8</name>
</Sequence>
- <Sequence start="1" end="164" id="a1127235554303">
+ <Sequence start="1" end="164" dictionary="vamsas:aa" id="a1127235554303">
<sequence>KVALVTGAANGIGLAIAERLYQEGATLALADWNEEQLAIVIEQFDSARVYAQKVDVSDPEQVQALVRKTVERFGRLDILVNNAGIHIPGTVLECSVQDWRRIASVNIDGVVYCAMHALPELIKTRGCMVNTASVSGLGGDWGAAFYCATKGAVVNFTRALALD</sequence>
<name>Q9KRP5</name>
</Sequence>
- <Sequence start="1" end="163" id="a1127235554304">
+ <Sequence start="1" end="163" dictionary="vamsas:aa" id="a1127235554304">
<sequence>KIALVTGASRGIGRAIAELLVERGATVIGTATSEGGAAAISEYLGENGKGLALNVTDVESIEATLKAINDEFGAIDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREV</sequence>
<name>Q87N22</name>
</Sequence>
<Provenance>
<entry>
<User>jim</User>
+ <App>Jalview</App>
<Action>edited</Action>
<Date>2005-12-21</Date>
</entry>
<Provenance>
<entry>
<User>jim</User>
+ <App>Jalview</App>
<Action>edited</Action>
<Date>2005-11-21</Date>
</entry>
</Provenance>
</DataSet>
</VAMSAS>
- <ApplicationData xmlns="http://www.vamsas.org"></ApplicationData>
+ <ApplicationData xmlns="http://www.vamsas.org" version="" name="">
+ <dataReference>name of accompanying jar entry containing data</dataReference> <!-- alternative is base64 encoded string in <data></data> -->
+ <User fullname="a user" organization="probably very little">
+ <dataReference>another accompanying jar entry or the data tag with embedded data.</dataReference>
+ </User>
+ <Common><dataReference>another bogus reference</dataReference></Common>
+ </ApplicationData>
+ <ApplicationData xmlns="http://www.vamsas.org" version="alpha" name="hmm">
+ <data>somedata</data>
+ <Instance urn="hmm://myInstancetype"><dataReference>some reference</dataReference></Instance>
+ </ApplicationData>
+
</VamsasDocument>