<!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
<!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
- <xs:element name="Version" type="xs:string"/>
- <xs:annotation>
- <xs:documentation>DESCRIPTION</xs:documentation>
- </xs:annotation>
-
- <xs:complexType name="LockFile">
- <xs:simpleContent>
- <xs:extension base="xs:string"/>
- </xs:simpleContent>
- </xs:complexType>
<xs:element name="VAMSAS">
- <xs:complexType>
-
- <xs:sequence>
- <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
- </xs:sequence>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element ref="vamsas:DataSet" minOccurs="0" maxOccurs="unbounded"/>
+ </xs:sequence>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
+ </xs:complexType>
+ </xs:element>
+ <xs:element name="Tree">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="title" type="xs:string" minOccurs="0"/>
+ <xs:element name="newick" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:simpleContent>
+ <xs:extension base="xs:string">
+ <xs:attribute name="title" type="xs:string" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
+ </xs:extension>
+ </xs:simpleContent>
+ </xs:complexType>
+ </xs:element>
+ <xs:element ref="vamsas:Provenance"/>
+ </xs:sequence>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
- </xs:element>
- <xs:element name="Tree">
- <xs:complexType>
- <xs:sequence>
- <xs:element name="title" type="xs:string" minOccurs="0" maxOccurs="1"/>
- <xs:element name="newick" minOccurs="1" maxOccurs="unbounded">
- <xs:complexType>
- <xs:simpleContent>
- <xs:extension base="xs:string">
- <xs:attribute name="title" type="xs:string" use="optional"/>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
- </xs:extension>
- </xs:simpleContent>
- </xs:complexType>
- </xs:element>
- <xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
- </xs:sequence>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
- </xs:complexType>
</xs:element>
<xs:element name="Provenance">
<xs:complexType>
<xs:sequence>
- <xs:element name="entry" minOccurs="0" maxOccurs="unbounded">
+ <xs:element name="entry" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="User" type="xs:string"/>
<xs:element name="Action" type="xs:string"/>
<xs:element name="Date" type="xs:date"/>
</xs:sequence>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
-
- <xs:element name="SequenceSet">
+ <xs:element name="DataSet">
<xs:complexType>
<xs:sequence>
<xs:element name="Sequence" maxOccurs="unbounded">
<xs:complexContent>
<xs:extension base="vamsas:SequenceType">
<xs:sequence>
- <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
- <xs:complexType>
- <xs:attribute name="source"/>
- <xs:attribute name="version"/>
- <xs:attribute name="accessionId"/>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
- </xs:complexType>
+ <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:attribute name="source" type="xs:string"/>
+ <xs:attribute name="version" type="xs:string"/>
+ <xs:attribute name="accessionId" type="xs:string"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
+ </xs:complexType>
</xs:element>
</xs:sequence>
- <xs:attribute name="id" type="xs:ID" use="required"/>
+ <xs:attribute name="id" type="xs:ID" use="required"/>
<xs:attribute name="dictionary" type="xs:string"/>
</xs:extension>
</xs:complexContent>
</xs:complexType>
</xs:element>
- <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
+ <xs:element name="DataSetAnnotations" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="description" type="xs:string" minOccurs="0"/>
<xs:element name="status" type="xs:string" minOccurs="0"/>
<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element ref="vamsas:Provenance" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element ref="vamsas:Provenance" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="type" type="xs:string" use="required"/>
<xs:attribute name="end" type="xs:string" use="required"/>
<xs:attribute name="begin" type="xs:string" use="required"/>
<xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
</xs:element>
<xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
- <xs:element name="AlignmentAnnotations" minOccurs="0">
+ <xs:element name="AlignmentAnnotations" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
<xs:element ref="vamsas:Provenance"/>
</xs:sequence>
<xs:attribute name="graph" type="xs:boolean" use="required"/>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
</xs:element>
<xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
- <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
+ <xs:element name="alignmentSequence" maxOccurs="unbounded">
<xs:complexType>
<xs:complexContent>
<xs:extension base="vamsas:SequenceType">
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
<xs:attribute name="refid" type="xs:IDREF" use="required"/>
</xs:extension>
</xs:complexContent>
</xs:element>
<xs:element ref="vamsas:Provenance"/>
</xs:sequence>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="gapChar" type="xs:string" use="required"/>
+ <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
</xs:element>
<xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
<xs:element ref="vamsas:Provenance"/>
</xs:sequence>
- <xs:attribute name="gapChar" type="xs:string" use="required"/>
- <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
</xs:element>
<xs:element name="annotationElement">
<xs:complexType>
<xs:sequence>
- <xs:element name="displayCharacter" type="xs:string"/>
- <xs:element name="description" type="xs:string"/>
- <xs:element name="secondaryStructure">
+ <xs:element name="displayCharacter" type="xs:string" minOccurs="0"/>
+ <xs:element name="description" type="xs:string" minOccurs="0"/>
+ <xs:element name="secondaryStructure" minOccurs="0">
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:length value="1"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
- <xs:element name="value" type="xs:float"/>
+ <xs:element name="value" type="xs:float" minOccurs="0"/>
</xs:sequence>
<xs:attribute name="position" type="xs:int" use="required"/>
- <xs:attribute name="id" type="xs:ID" use="optional"/>
+ <xs:attribute name="id" type="xs:ID" use="optional"/>
</xs:complexType>
</xs:element>
- <xs:complexType name="SequenceType">
+ <xs:complexType name="SequenceType">
<xs:sequence>
<xs:element name="sequence" type="xs:string"/>
<xs:element name="name" type="xs:string"/>
<xs:attribute name="start" type="xs:int" use="required"/>
<xs:attribute name="end" type="xs:int" use="required"/>
</xs:complexType>
-
- <xs:complexType name="ApplicationData">
- <xs:sequence>
- <xs:element name="Application">
- <xs:complexType>
- <xs:sequence>
- <xs:element name="User">
- <xs:complexType>
- <xs:attribute name="fullname" type="xs:string"/>
- <xs:attribute name="organization" type="xs:string"/>
- <xs:attribute name="data" type="xs:string"/>
- </xs:complexType>
- </xs:element>
- </xs:sequence>
- <xs:attribute name="version" type="xs:string"/>
- <xs:attribute name="name" type="xs:string"/>
- <xs:attribute name="urn" type="xs:string"/>
- <xs:attribute name="data" type="xs:string"/>
- </xs:complexType>
- </xs:element>
- </xs:sequence>
- </xs:complexType>
+ <xs:element name="ApplicationData">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="Application" minOccurs="0" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="User" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:attribute name="fullname" type="xs:string"/>
+ <xs:attribute name="organization" type="xs:string"/>
+ <xs:attribute name="data" type="xs:string"/>
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ <xs:attribute name="version" type="xs:string" use="required"/>
+ <xs:attribute name="name" type="xs:string" use="required"/>
+ <xs:attribute name="urn" type="xs:string" use="required"/>
+ <xs:attribute name="data" type="xs:string" use="required"/>
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ </xs:complexType>
+ </xs:element>
</xs:schema>
git://source.jalview.org / vamsas.git / blobdiff