quick commit before refactoring

[vamsas.git] / src / org / vamsas / objects / core / AlignmentAnnotation.java

diff --git a/src/org/vamsas/objects/core/AlignmentAnnotation.java b/src/org/vamsas/objects/core/AlignmentAnnotation.java
index 884c390..3fb9dfc 100644 (file)
--- a/src/org/vamsas/objects/core/AlignmentAnnotation.java
+++ b/src/org/vamsas/objects/core/AlignmentAnnotation.java
@@ -22,9 +22,8 @@ import org.exolab.castor.xml.ValidationException;
 import org.xml.sax.ContentHandler;\r
 \r
 /**\r
- * This is annotation over the\r
- *  coordinate frame defined by all\r
- *  the columns in the alignment.\r
+ * This is annotation over the coordinate frame\r
+ *  defined by all the columns in the alignment.\r
  *  \r
  * \r
  * @version $Revision$ $Date$\r
@@ -39,15 +38,10 @@ implements java.io.Serializable
     //--------------------------/\r
 \r
     /**\r
-     * TODO: decide if\r
-     *  this flag is\r
-     *  redundant - when\r
-     *  true it would\r
-     *  suggest that the\r
-     *  annotationElement\r
-     *  values together\r
-     *  form a graph\r
-     *  \r
+     * TODO: decide if this flag is\r
+     *  redundant - when true it would suggest that\r
+     *  the annotationElement values together form a\r
+     *  graph \r
      */\r
     private boolean _graph;\r
 \r
@@ -120,15 +114,10 @@ implements java.io.Serializable
 \r
     /**\r
      * Returns the value of field 'graph'. The field 'graph' has\r
-     * the following description: TODO: decide if\r
-     *  this flag is\r
-     *  redundant - when\r
-     *  true it would\r
-     *  suggest that the\r
-     *  annotationElement\r
-     *  values together\r
-     *  form a graph\r
-     *  \r
+     * the following description: TODO: decide if this flag is\r
+     *  redundant - when true it would suggest that\r
+     *  the annotationElement values together form a\r
+     *  graph \r
      * \r
      * @return boolean\r
      * @return the value of field 'graph'.\r
@@ -209,15 +198,10 @@ implements java.io.Serializable
 \r
     /**\r
      * Sets the value of field 'graph'. The field 'graph' has the\r
-     * following description: TODO: decide if\r
-     *  this flag is\r
-     *  redundant - when\r
-     *  true it would\r
-     *  suggest that the\r
-     *  annotationElement\r
-     *  values together\r
-     *  form a graph\r
-     *  \r
+     * following description: TODO: decide if this flag is\r
+     *  redundant - when true it would suggest that\r
+     *  the annotationElement values together form a\r
+     *  graph \r
      * \r
      * @param graph the value of field 'graph'.\r
      */\r