+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package org.vamsas.objects.core;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-import org.xml.sax.ContentHandler;\r
-\r
-/**\r
- * Class AlignmentSequenceAnnotation.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class AlignmentSequenceAnnotation extends org.vamsas.objects.core.RangeAnnotation \r
-implements java.io.Serializable\r
-{\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * TODO:\r
- * decide if this flag is\r
- * redundant - when true it\r
- * would suggest that the\r
- * annotationElement values\r
- * together form a graph\r
- * \r
- */\r
- private boolean _graph;\r
-\r
- /**\r
- * keeps track of state for field: _graph\r
- */\r
- private boolean _has_graph;\r
-\r
- /**\r
- * Field _provenance\r
- */\r
- private org.vamsas.objects.core.Provenance _provenance;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public AlignmentSequenceAnnotation() \r
- {\r
- super();\r
- } //-- org.vamsas.objects.core.AlignmentSequenceAnnotation()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method deleteGraph\r
- * \r
- */\r
- public void deleteGraph()\r
- {\r
- this._has_graph= false;\r
- } //-- void deleteGraph() \r
-\r
- /**\r
- * Note: hashCode() has not been overriden\r
- * \r
- * @param obj\r
- * @return boolean\r
- */\r
- public boolean equals(java.lang.Object obj)\r
- {\r
- if ( this == obj )\r
- return true;\r
- \r
- if (super.equals(obj)==false)\r
- return false;\r
- \r
- if (obj instanceof AlignmentSequenceAnnotation) {\r
- \r
- AlignmentSequenceAnnotation temp = (AlignmentSequenceAnnotation)obj;\r
- if (this._graph != temp._graph)\r
- return false;\r
- if (this._has_graph != temp._has_graph)\r
- return false;\r
- if (this._provenance != null) {\r
- if (temp._provenance == null) return false;\r
- else if (!(this._provenance.equals(temp._provenance))) \r
- return false;\r
- }\r
- else if (temp._provenance != null)\r
- return false;\r
- return true;\r
- }\r
- return false;\r
- } //-- boolean equals(java.lang.Object) \r
-\r
- /**\r
- * Returns the value of field 'graph'. The field 'graph' has\r
- * the following description: TODO:\r
- * decide if this flag is\r
- * redundant - when true it\r
- * would suggest that the\r
- * annotationElement values\r
- * together form a graph\r
- * \r
- * \r
- * @return boolean\r
- * @return the value of field 'graph'.\r
- */\r
- public boolean getGraph()\r
- {\r
- return this._graph;\r
- } //-- boolean getGraph() \r
-\r
- /**\r
- * Returns the value of field 'provenance'.\r
- * \r
- * @return Provenance\r
- * @return the value of field 'provenance'.\r
- */\r
- public org.vamsas.objects.core.Provenance getProvenance()\r
- {\r
- return this._provenance;\r
- } //-- org.vamsas.objects.core.Provenance getProvenance() \r
-\r
- /**\r
- * Method hasGraph\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasGraph()\r
- {\r
- return this._has_graph;\r
- } //-- boolean hasGraph() \r
-\r
- /**\r
- * Method isValid\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try {\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid() \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
-\r
- /**\r
- * Sets the value of field 'graph'. The field 'graph' has the\r
- * following description: TODO:\r
- * decide if this flag is\r
- * redundant - when true it\r
- * would suggest that the\r
- * annotationElement values\r
- * together form a graph\r
- * \r
- * \r
- * @param graph the value of field 'graph'.\r
- */\r
- public void setGraph(boolean graph)\r
- {\r
- this._graph = graph;\r
- this._has_graph = true;\r
- } //-- void setGraph(boolean) \r
-\r
- /**\r
- * Sets the value of field 'provenance'.\r
- * \r
- * @param provenance the value of field 'provenance'.\r
- */\r
- public void setProvenance(org.vamsas.objects.core.Provenance provenance)\r
- {\r
- this._provenance = provenance;\r
- } //-- void setProvenance(org.vamsas.objects.core.Provenance) \r
-\r
- /**\r
- * Method unmarshal\r
- * \r
- * \r
- * \r
- * @param reader\r
- * @return RangeType\r
- */\r
- public static org.vamsas.objects.core.RangeType unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- return (org.vamsas.objects.core.AlignmentSequenceAnnotation) Unmarshaller.unmarshal(org.vamsas.objects.core.AlignmentSequenceAnnotation.class, reader);\r
- } //-- org.vamsas.objects.core.RangeType unmarshal(java.io.Reader) \r
-\r
- /**\r
- * Method validate\r
- * \r
- */\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- } //-- void validate() \r
-\r
-}\r
git://source.jalview.org / vamsas.git / blobdiff