refactored from org.vamsas to uk.ac.vamsas
[vamsas.git] / src / org / vamsas / objects / core / AlignmentSequenceAnnotationDescriptor.java
diff --git a/src/org/vamsas/objects/core/AlignmentSequenceAnnotationDescriptor.java b/src/org/vamsas/objects/core/AlignmentSequenceAnnotationDescriptor.java
deleted file mode 100644 (file)
index a4aa126..0000000
+++ /dev/null
@@ -1,255 +0,0 @@
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package org.vamsas.objects.core;\r
-\r
-  //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class AlignmentSequenceAnnotationDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class AlignmentSequenceAnnotationDescriptor extends org.vamsas.objects.core.RangeAnnotationDescriptor {\r
-\r
-\r
-      //--------------------------/\r
-     //- Class/Member Variables -/\r
-    //--------------------------/\r
-\r
-    /**\r
-     * Field nsPrefix\r
-     */\r
-    private java.lang.String nsPrefix;\r
-\r
-    /**\r
-     * Field nsURI\r
-     */\r
-    private java.lang.String nsURI;\r
-\r
-    /**\r
-     * Field xmlName\r
-     */\r
-    private java.lang.String xmlName;\r
-\r
-    /**\r
-     * Field identity\r
-     */\r
-    private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
-      //----------------/\r
-     //- Constructors -/\r
-    //----------------/\r
-\r
-    public AlignmentSequenceAnnotationDescriptor() \r
-     {\r
-        super();\r
-        setExtendsWithoutFlatten(new org.vamsas.objects.core.RangeAnnotationDescriptor());\r
-        nsURI = "http://www.vamsas.org";\r
-        xmlName = "AlignmentSequenceAnnotation";\r
-        \r
-        //-- set grouping compositor\r
-        setCompositorAsSequence();\r
-        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
-        org.exolab.castor.mapping.FieldHandler             handler        = null;\r
-        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
-        //-- initialize attribute descriptors\r
-        \r
-        //-- _graph\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;\r
-                if(!target.hasGraph())\r
-                    return null;\r
-                return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;\r
-                    // ignore null values for non optional primitives\r
-                    if (value == null) return;\r
-                    \r
-                    target.setGraph( ((java.lang.Boolean)value).booleanValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _graph\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(1);\r
-        { //-- local scope\r
-            BooleanValidator typeValidator = new BooleanValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- initialize element descriptors\r
-        \r
-        //-- _provenance\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;\r
-                return target.getProvenance();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;\r
-                    target.setProvenance( (org.vamsas.objects.core.Provenance) value);\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return new org.vamsas.objects.core.Provenance();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("http://www.vamsas.org");\r
-        desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _provenance\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(1);\r
-        { //-- local scope\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-    } //-- org.vamsas.objects.core.AlignmentSequenceAnnotationDescriptor()\r
-\r
-\r
-      //-----------/\r
-     //- Methods -/\r
-    //-----------/\r
-\r
-    /**\r
-     * Method getAccessMode\r
-     * \r
-     * \r
-     * \r
-     * @return AccessMode\r
-     */\r
-    public org.exolab.castor.mapping.AccessMode getAccessMode()\r
-    {\r
-        return null;\r
-    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
-    /**\r
-     * Method getExtends\r
-     * \r
-     * \r
-     * \r
-     * @return ClassDescriptor\r
-     */\r
-    public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
-    {\r
-        return super.getExtends();\r
-    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
-    /**\r
-     * Method getIdentity\r
-     * \r
-     * \r
-     * \r
-     * @return FieldDescriptor\r
-     */\r
-    public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
-    {\r
-        if (identity == null)\r
-            return super.getIdentity();\r
-        return identity;\r
-    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
-    /**\r
-     * Method getJavaClass\r
-     * \r
-     * \r
-     * \r
-     * @return Class\r
-     */\r
-    public java.lang.Class getJavaClass()\r
-    {\r
-        return org.vamsas.objects.core.AlignmentSequenceAnnotation.class;\r
-    } //-- java.lang.Class getJavaClass() \r
-\r
-    /**\r
-     * Method getNameSpacePrefix\r
-     * \r
-     * \r
-     * \r
-     * @return String\r
-     */\r
-    public java.lang.String getNameSpacePrefix()\r
-    {\r
-        return nsPrefix;\r
-    } //-- java.lang.String getNameSpacePrefix() \r
-\r
-    /**\r
-     * Method getNameSpaceURI\r
-     * \r
-     * \r
-     * \r
-     * @return String\r
-     */\r
-    public java.lang.String getNameSpaceURI()\r
-    {\r
-        return nsURI;\r
-    } //-- java.lang.String getNameSpaceURI() \r
-\r
-    /**\r
-     * Method getValidator\r
-     * \r
-     * \r
-     * \r
-     * @return TypeValidator\r
-     */\r
-    public org.exolab.castor.xml.TypeValidator getValidator()\r
-    {\r
-        return this;\r
-    } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
-    /**\r
-     * Method getXMLName\r
-     * \r
-     * \r
-     * \r
-     * @return String\r
-     */\r
-    public java.lang.String getXMLName()\r
-    {\r
-        return xmlName;\r
-    } //-- java.lang.String getXMLName() \r
-\r
-}\r