--- /dev/null
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 0.9.9M1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package org.vamsas.objects.core;
+
+ //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+import org.exolab.castor.xml.MarshalException;
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+import org.exolab.castor.xml.ValidationException;
+import org.xml.sax.ContentHandler;
+
+/**
+ * Class AnnotationElement.
+ *
+ * @version $Revision$ $Date$
+ */
+public class AnnotationElement extends org.vamsas.client.object
+implements java.io.Serializable
+{
+
+
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
+
+ /**
+ * Field _position
+ */
+ private int _position;
+
+ /**
+ * keeps track of state for field: _position
+ */
+ private boolean _has_position;
+
+ /**
+ * Field _displayCharacter
+ */
+ private java.lang.String _displayCharacter;
+
+ /**
+ * Field _description
+ */
+ private java.lang.String _description;
+
+ /**
+ * Field _secondaryStructure
+ */
+ private java.lang.String _secondaryStructure;
+
+ /**
+ * Field _value
+ */
+ private float _value;
+
+ /**
+ * keeps track of state for field: _value
+ */
+ private boolean _has_value;
+
+
+ //----------------/
+ //- Constructors -/
+ //----------------/
+
+ public AnnotationElement()
+ {
+ super();
+ } //-- org.vamsas.objects.core.AnnotationElement()
+
+
+ //-----------/
+ //- Methods -/
+ //-----------/
+
+ /**
+ * Method deletePosition
+ *
+ */
+ public void deletePosition()
+ {
+ this._has_position= false;
+ } //-- void deletePosition()
+
+ /**
+ * Method deleteValue
+ *
+ */
+ public void deleteValue()
+ {
+ this._has_value= false;
+ } //-- void deleteValue()
+
+ /**
+ * Note: hashCode() has not been overriden
+ *
+ * @param obj
+ * @return boolean
+ */
+ public boolean equals(java.lang.Object obj)
+ {
+ if ( this == obj )
+ return true;
+
+ if (super.equals(obj)==false)
+ return false;
+
+ if (obj instanceof AnnotationElement) {
+
+ AnnotationElement temp = (AnnotationElement)obj;
+ if (this._position != temp._position)
+ return false;
+ if (this._has_position != temp._has_position)
+ return false;
+ if (this._displayCharacter != null) {
+ if (temp._displayCharacter == null) return false;
+ else if (!(this._displayCharacter.equals(temp._displayCharacter)))
+ return false;
+ }
+ else if (temp._displayCharacter != null)
+ return false;
+ if (this._description != null) {
+ if (temp._description == null) return false;
+ else if (!(this._description.equals(temp._description)))
+ return false;
+ }
+ else if (temp._description != null)
+ return false;
+ if (this._secondaryStructure != null) {
+ if (temp._secondaryStructure == null) return false;
+ else if (!(this._secondaryStructure.equals(temp._secondaryStructure)))
+ return false;
+ }
+ else if (temp._secondaryStructure != null)
+ return false;
+ if (this._value != temp._value)
+ return false;
+ if (this._has_value != temp._has_value)
+ return false;
+ return true;
+ }
+ return false;
+ } //-- boolean equals(java.lang.Object)
+
+ /**
+ * Returns the value of field 'description'.
+ *
+ * @return String
+ * @return the value of field 'description'.
+ */
+ public java.lang.String getDescription()
+ {
+ return this._description;
+ } //-- java.lang.String getDescription()
+
+ /**
+ * Returns the value of field 'displayCharacter'.
+ *
+ * @return String
+ * @return the value of field 'displayCharacter'.
+ */
+ public java.lang.String getDisplayCharacter()
+ {
+ return this._displayCharacter;
+ } //-- java.lang.String getDisplayCharacter()
+
+ /**
+ * Returns the value of field 'position'.
+ *
+ * @return int
+ * @return the value of field 'position'.
+ */
+ public int getPosition()
+ {
+ return this._position;
+ } //-- int getPosition()
+
+ /**
+ * Returns the value of field 'secondaryStructure'.
+ *
+ * @return String
+ * @return the value of field 'secondaryStructure'.
+ */
+ public java.lang.String getSecondaryStructure()
+ {
+ return this._secondaryStructure;
+ } //-- java.lang.String getSecondaryStructure()
+
+ /**
+ * Returns the value of field 'value'.
+ *
+ * @return float
+ * @return the value of field 'value'.
+ */
+ public float getValue()
+ {
+ return this._value;
+ } //-- float getValue()
+
+ /**
+ * Method hasPosition
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean hasPosition()
+ {
+ return this._has_position;
+ } //-- boolean hasPosition()
+
+ /**
+ * Method hasValue
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean hasValue()
+ {
+ return this._has_value;
+ } //-- boolean hasValue()
+
+ /**
+ * Method isValid
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean isValid()
+ {
+ try {
+ validate();
+ }
+ catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ } //-- boolean isValid()
+
+ /**
+ * Method marshal
+ *
+ *
+ *
+ * @param out
+ */
+ public void marshal(java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+ {
+
+ Marshaller.marshal(this, out);
+ } //-- void marshal(java.io.Writer)
+
+ /**
+ * Method marshal
+ *
+ *
+ *
+ * @param handler
+ */
+ public void marshal(org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+ {
+
+ Marshaller.marshal(this, handler);
+ } //-- void marshal(org.xml.sax.ContentHandler)
+
+ /**
+ * Sets the value of field 'description'.
+ *
+ * @param description the value of field 'description'.
+ */
+ public void setDescription(java.lang.String description)
+ {
+ this._description = description;
+ } //-- void setDescription(java.lang.String)
+
+ /**
+ * Sets the value of field 'displayCharacter'.
+ *
+ * @param displayCharacter the value of field 'displayCharacter'
+ */
+ public void setDisplayCharacter(java.lang.String displayCharacter)
+ {
+ this._displayCharacter = displayCharacter;
+ } //-- void setDisplayCharacter(java.lang.String)
+
+ /**
+ * Sets the value of field 'position'.
+ *
+ * @param position the value of field 'position'.
+ */
+ public void setPosition(int position)
+ {
+ this._position = position;
+ this._has_position = true;
+ } //-- void setPosition(int)
+
+ /**
+ * Sets the value of field 'secondaryStructure'.
+ *
+ * @param secondaryStructure the value of field
+ * 'secondaryStructure'.
+ */
+ public void setSecondaryStructure(java.lang.String secondaryStructure)
+ {
+ this._secondaryStructure = secondaryStructure;
+ } //-- void setSecondaryStructure(java.lang.String)
+
+ /**
+ * Sets the value of field 'value'.
+ *
+ * @param value the value of field 'value'.
+ */
+ public void setValue(float value)
+ {
+ this._value = value;
+ this._has_value = true;
+ } //-- void setValue(float)
+
+ /**
+ * Method unmarshal
+ *
+ *
+ *
+ * @param reader
+ * @return AnnotationElement
+ */
+ public static org.vamsas.objects.core.AnnotationElement unmarshal(java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+ {
+ return (org.vamsas.objects.core.AnnotationElement) Unmarshaller.unmarshal(org.vamsas.objects.core.AnnotationElement.class, reader);
+ } //-- org.vamsas.objects.core.AnnotationElement unmarshal(java.io.Reader)
+
+ /**
+ * Method validate
+ *
+ */
+ public void validate()
+ throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ } //-- void validate()
+
+}
git://source.jalview.org / vamsas.git / blobdiff